; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015541 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015541
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S23-like
Genome locationscaffold300:403647..403943
RNA-Seq ExpressionMS015541
SyntenyMS015541
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580588.1 40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia]7.0e-3374.14Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGRKGHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

KCW49709.1 hypothetical protein EUGRSUZ_K03211 [Eucalyptus grandis]8.3e-3480.37Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGIEK---IAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV------LLALFKE
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I K   IAAFVPN+  GCLN IEENDEVLIAGFGRKGHAVGDIP V FKVV      LLALFKE
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGIEK---IAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV------LLALFKE

Query:  KKEKLRS
        KKEK RS
Subjt:  KKEKLRS

XP_007144531.1 hypothetical protein PHAVU_007G163700g [Phaseolus vulgaris]7.0e-3374.14Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGRKGHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

XP_022145774.1 40S ribosomal protein S23-like [Momordica charantia]1.1e-3677.59Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

XP_031478456.1 40S ribosomal protein S23 isoform X1 [Nymphaea colorata]7.0e-3374.14Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGRKGHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

TrEMBL top hitse value%identityAlignment
A0A059A7I0 Uncharacterized protein3.4e-3374.14Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGRKGHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

A0A059A7J6 Uncharacterized protein4.0e-3480.37Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGIEK---IAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV------LLALFKE
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I K   IAAFVPN+  GCLN IEENDEVLIAGFGRKGHAVGDIP V FKVV      LLALFKE
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGIEK---IAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV------LLALFKE

Query:  KKEKLRS
        KKEK RS
Subjt:  KKEKLRS

A0A251UBC5 Putative ribosomal protein S12/S233.4e-3374.14Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGRKGHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

A0A6J1CW97 40S ribosomal protein S23-like5.1e-3777.59Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

A0A6J1KCN2 40S ribosomal protein S233.4e-3374.14Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGRKGHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

SwissProt top hitse value%identityAlignment
P46297 40S ribosomal protein S239.2e-3674.14Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGRKGHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

P49201 40S ribosomal protein S23-29.2e-3674.14Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGRKGHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

Q86FP7 40S ribosomal protein S233.8e-2962.39Show/hide
Query:  KSHLGNEGK-KPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV---
        K+HLG   K  PF G+SHAKGIVLEK+G+EAKQ N  I            +KI AFVP +  GCLN IEENDEVL+AGFGRKGHAVGDIP V FKVV   
Subjt:  KSHLGNEGK-KPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV---

Query:  ---LLALFKEKKEKLRS
           LLAL+KEKKE+ RS
Subjt:  ---LLALFKEKKEKLRS

Q9M5Z9 40S ribosomal protein S239.2e-3674.14Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGRKGHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

Q9SF35 40S ribosomal protein S23-13.3e-3371.55Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----
        KS+ GNE KKPFA SSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGRKGHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

Arabidopsis top hitse value%identityAlignment
AT3G09680.1 Ribosomal protein S12/S23 family protein2.3e-3471.55Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----
        KS+ GNE KKPFA SSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGRKGHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS

AT5G02960.1 Ribosomal protein S12/S23 family protein6.6e-3774.14Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I            +KIAAFVPN+  GCLN IEENDEVLIAGFGRKGHAVGDIP V FKVV    
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGI------------EKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKLRS
          LLALFKEKKEK RS
Subjt:  --LLALFKEKKEKLRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGTCTCACCTTGGAAATGAAGGGAAGAAGCCATTTGCCGGTTCTTCTCATGCAAAAGGCATTGTTTTGGAAAAGATTGGTATTGAGGCTAAGCAGACAAATTATGGTAT
TGAAAAAATTGCCGCATTTGTGCCTAATGAGATATATGGTTGTCTTAACCAAATTGAGGAGAATGATGAAGTATTGATTGCCGGATTCGGTCGTAAAGGACATGCCGTCG
GAGACATTCCTGATGTTGGATTCAAGGTTGTCCTCCTTGCACTTTTTAAGGAAAAGAAGGAGAAGCTAAGGTCT
mRNA sequenceShow/hide mRNA sequence
AAGTCTCACCTTGGAAATGAAGGGAAGAAGCCATTTGCCGGTTCTTCTCATGCAAAAGGCATTGTTTTGGAAAAGATTGGTATTGAGGCTAAGCAGACAAATTATGGTAT
TGAAAAAATTGCCGCATTTGTGCCTAATGAGATATATGGTTGTCTTAACCAAATTGAGGAGAATGATGAAGTATTGATTGCCGGATTCGGTCGTAAAGGACATGCCGTCG
GAGACATTCCTGATGTTGGATTCAAGGTTGTCCTCCTTGCACTTTTTAAGGAAAAGAAGGAGAAGCTAAGGTCT
Protein sequenceShow/hide protein sequence
KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNYGIEKIAAFVPNEIYGCLNQIEENDEVLIAGFGRKGHAVGDIPDVGFKVVLLALFKEKKEKLRS