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MS015545 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015545
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription factor DIVARICATA-like
Genome locationscaffold300:427152..427454
RNA-Seq ExpressionMS015545
SyntenyMS015545
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KMS97920.1 hypothetical protein BVRB_4g097390 [Beta vulgaris subsp. vulgaris]1.1e-1253.75Show/hide
Query:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHG
        RLF+IG+E YGKG+W+ I+  +V+T+T TQVASHAQKYY         LRQ +GK  R +SSI DITTVD    A+ + G
Subjt:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHG

XP_010695074.1 PREDICTED: transcription factor DIVARICATA [Beta vulgaris subsp. vulgaris]1.1e-1253.75Show/hide
Query:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHG
        RLF+IG+E YGKG+W+ I+  +V+T+T TQVASHAQKYY         LRQ +GK  R +SSI DITTVD    A+ + G
Subjt:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHG

XP_021730551.1 transcription factor SRM1-like [Chenopodium quinoa]1.3e-1354.02Show/hide
Query:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGHAPIVQP
        RLF+IG+E YGKG+W+ I+  +V+T+T TQVASHAQKYY         LRQ +GK  R +SSI DITTVD  S AR     + I QP
Subjt:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGHAPIVQP

XP_022145130.1 transcription factor DIVARICATA-like [Momordica charantia]9.2e-2867.62Show/hide
Query:  LFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLL-HGHAP-IVQPPSPP---QQFTI
        LF++G+E YG GNWK+IAT+ V+T+T TQVASHAQKY  Y QNPN N  Q+NGKS R+KSSIFDIT VDPHS+ RLL    AP  +QPP PP   QQFTI
Subjt:  LFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLL-HGHAP-IVQPPSPP---QQFTI

Query:  TNYYP
        TNYYP
Subjt:  TNYYP

XP_022145147.1 uncharacterized protein LOC111014661 [Momordica charantia]4.0e-2361.9Show/hide
Query:  LFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGH-AP-IVQPP---SPPQQFTI
        LF++G E YGKGNWK+I+TK+ +TKT TQV SHAQKY+ Y+QNPN   +Q+NGKS  +KSSIF IT VDPHS A LL    AP  +QPP      QQFTI
Subjt:  LFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGH-AP-IVQPP---SPPQQFTI

Query:  TNYYP
        TNY+P
Subjt:  TNYYP

TrEMBL top hitse value%identityAlignment
A0A0J8E475 Uncharacterized protein5.3e-1353.75Show/hide
Query:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHG
        RLF+IG+E YGKG+W+ I+  +V+T+T TQVASHAQKYY         LRQ +GK  R +SSI DITTVD    A+ + G
Subjt:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHG

A0A6J1CTL3 transcription factor DIVARICATA-like4.4e-2867.62Show/hide
Query:  LFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLL-HGHAP-IVQPPSPP---QQFTI
        LF++G+E YG GNWK+IAT+ V+T+T TQVASHAQKY  Y QNPN N  Q+NGKS R+KSSIFDIT VDPHS+ RLL    AP  +QPP PP   QQFTI
Subjt:  LFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLL-HGHAP-IVQPPSPP---QQFTI

Query:  TNYYP
        TNYYP
Subjt:  TNYYP

A0A6J1CVN6 uncharacterized protein LOC1110146611.9e-2361.9Show/hide
Query:  LFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGH-AP-IVQPP---SPPQQFTI
        LF++G E YGKGNWK+I+TK+ +TKT TQV SHAQKY+ Y+QNPN   +Q+NGKS  +KSSIF IT VDPHS A LL    AP  +QPP      QQFTI
Subjt:  LFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGH-AP-IVQPP---SPPQQFTI

Query:  TNYYP
        TNY+P
Subjt:  TNYYP

A0A7C8ZAH3 Uncharacterized protein2.4e-1356.58Show/hide
Query:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKAR
        RLF+IG+E YGKG+W+ I+  +V+T+T TQVASHAQKYY         LRQ +GK  R +SSI DITTVD  + AR
Subjt:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKAR

A0A803N8C1 Uncharacterized protein6.2e-1454.02Show/hide
Query:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGHAPIVQP
        RLF+IG+E YGKG+W+ I+  +V+T+T TQVASHAQKYY         LRQ +GK  R +SSI DITTVD  S AR     + I QP
Subjt:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGHAPIVQP

SwissProt top hitse value%identityAlignment
B8A9B2 Transcription factor MYBS11.2e-0941.67Show/hide
Query:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGHAPI
        RLF++G++ +GKG+W+ I+   VI++T TQVASHAQKY+         +R  +    R +SSI DIT+V    +     G API
Subjt:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGHAPI

Q2V9B0 Transcription factor MYB1R11.5e-0940Show/hide
Query:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITT----VDPHSKARLLHGHAPIVQPPSPPQQFTI
        +LF++G++  GKG+W+ I+   V T+T TQVASHAQKY+         LR+ N    R +SS+FDITT    V P  +        P+V P + P   T 
Subjt:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITT----VDPHSKARLLHGHAPIVQPPSPPQQFTI

Query:  TNYYP
        TN +P
Subjt:  TNYYP

Q8LH59 Transcription factor MYBS11.2e-0941.67Show/hide
Query:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGHAPI
        RLF++G++ +GKG+W+ I+   VI++T TQVASHAQKY+         +R  +    R +SSI DIT+V    +     G API
Subjt:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGHAPI

Q8S9H7 Transcription factor DIVARICATA2.8e-1147.14Show/hide
Query:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVD
        +LF++G++ YGKG+W++I+   VIT+T TQVASHAQKY+         +RQ +G   + ++SI DITTV+
Subjt:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVD

Q9FNN6 Transcription factor SRM12.4e-1040Show/hide
Query:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGHAPIVQPPSP
        RLF++G++ YGKG+W+ I+   V+T+T TQVASHAQKY+         +R  +    R +SSI DIT+V          G+A +  P  P
Subjt:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGHAPIVQPPSP

Arabidopsis top hitse value%identityAlignment
AT1G49010.1 Duplicated homeodomain-like superfamily protein7.5e-1241.3Show/hide
Query:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGHAPIVQPPSPPQ
        RLF++G++ +GKG+W+ I+   VI++T TQVASHAQKY+         +R  +    R +SSI DITTV+  + A    G  P V    P Q
Subjt:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGHAPIVQPPSPPQ

AT2G38090.1 Duplicated homeodomain-like superfamily protein1.8e-1345.65Show/hide
Query:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVD-PHSKARLLHGHAPIVQPPSPP
        R F++G++ YGKG+W++IA   V T+T TQVASHAQKY+         +RQ NG   + +SSI DITTV+ P S       +A    P SPP
Subjt:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVD-PHSKARLLHGHAPIVQPPSPP

AT5G01200.1 Duplicated homeodomain-like superfamily protein2.0e-1241.05Show/hide
Query:  FVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVD-PHSKARLLHGHAPIVQPPSPPQQFTI
        F++G++ YGKG+W++IA   V T+T TQVASHAQKY+         LRQ      + +SSI DITTV+ P + A      A +   P+P   F +
Subjt:  FVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVD-PHSKARLLHGHAPIVQPPSPPQQFTI

AT5G04760.1 Duplicated homeodomain-like superfamily protein3.6e-1445.36Show/hide
Query:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVD-----PHSKARLLHGHAPIVQPPSPPQ
        +LF+IG++ YGKG+W+ I+  +V+T+T TQVASHAQKY+         LRQ + K  R +SSI DITTVD     P S       H   VQ P   Q
Subjt:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVD-----PHSKARLLHGHAPIVQPPSPPQ

AT5G58900.1 Homeodomain-like transcriptional regulator3.1e-1343.53Show/hide
Query:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGHAPIV
        +LF++G++ YGKG+W++I+   VIT+T TQVASHAQKY+         +RQ +G   + ++SI DITTV+   +A L    + IV
Subjt:  RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGHAPIV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGTTATTTGTGATCGGGATTGAGATGTATGGAAAAGGAAATTGGAAAGATATTGCAACAAAATTGGTGATCACAAAAACTTACACACAGGTGGCAAGCCATGCCCAAAA
GTACTATGACTATCACCAAAACCCTAACCCTAATTTAAGACAGAAAAATGGAAAGAGTGGCAGGGCCAAGTCCAGTATTTTCGACATCACCACCGTAGATCCCCACTCCA
AGGCGCGCTTGCTTCACGGTCATGCGCCCATTGTTCAACCACCTTCGCCGCCTCAACAATTTACCATTACCAATTACTATCCT
mRNA sequenceShow/hide mRNA sequence
AGGTTATTTGTGATCGGGATTGAGATGTATGGAAAAGGAAATTGGAAAGATATTGCAACAAAATTGGTGATCACAAAAACTTACACACAGGTGGCAAGCCATGCCCAAAA
GTACTATGACTATCACCAAAACCCTAACCCTAATTTAAGACAGAAAAATGGAAAGAGTGGCAGGGCCAAGTCCAGTATTTTCGACATCACCACCGTAGATCCCCACTCCA
AGGCGCGCTTGCTTCACGGTCATGCGCCCATTGTTCAACCACCTTCGCCGCCTCAACAATTTACCATTACCAATTACTATCCT
Protein sequenceShow/hide protein sequence
RLFVIGIEMYGKGNWKDIATKLVITKTYTQVASHAQKYYDYHQNPNPNLRQKNGKSGRAKSSIFDITTVDPHSKARLLHGHAPIVQPPSPPQQFTITNYYP