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MS015546 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015546
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDuplicated homeodomain-like superfamily protein
Genome locationscaffold300:442457..442729
RNA-Seq ExpressionMS015546
SyntenyMS015546
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR043363 - Transcription factor DIVARICATA-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3455427.1 myb-like protein J [Gossypium australe]2.1e-1565.08Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM
        FLIGL KFG+GDW++I+  +V+T++PTQVASH+QK+FLRQ   +++RKRSSIHDITTVD ++M
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM

MBA0829957.1 hypothetical protein [Gossypium armourianum]2.1e-1565.08Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM
        FLIGL KFG+GDW++I+  +V+T++PTQVASH+QK+FLRQ   +++RKRSSIHDITTVD ++M
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM

TYI64881.1 hypothetical protein E1A91_D09G119500v1 [Gossypium mustelinum]2.1e-1565.08Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM
        FLIGL KFG+GDW++I+  +V+T++PTQVASH+QK+FLRQ   +++RKRSSIHDITTVD ++M
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM

XP_016732485.1 transcription factor DIVARICATA [Gossypium hirsutum]2.1e-1565.08Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM
        FLIGL KFG+GDW++I+  +V+T++PTQVASH+QK+FLRQ   +++RKRSSIHDITTVD ++M
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM

XP_017608820.1 PREDICTED: transcription factor DIVARICATA-like [Gossypium arboreum]2.1e-1565.08Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM
        FLIGL KFG+GDW++I+  +V+T++PTQVASH+QK+FLRQ   +++RKRSSIHDITTVD ++M
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM

TrEMBL top hitse value%identityAlignment
A0A0B0NFJ5 Transcription factor MYB1R11.0e-1565.08Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM
        FLIGL KFG+GDW++I+  +V+T++PTQVASH+QK+FLRQ   +++RKRSSIHDITTVD ++M
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM

A0A0D2Q884 Uncharacterized protein1.0e-1565.08Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM
        FLIGL KFG+GDW++I+  +V+T++PTQVASH+QK+FLRQ   +++RKRSSIHDITTVD ++M
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM

A0A2P5WF88 Uncharacterized protein1.0e-1565.08Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM
        FLIGL KFG+GDW++I+  +V+T++PTQVASH+QK+FLRQ   +++RKRSSIHDITTVD ++M
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM

A0A5D2JFU7 Uncharacterized protein1.0e-1565.08Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM
        FLIGL KFG+GDW++I+  +V+T++PTQVASH+QK+FLRQ   +++RKRSSIHDITTVD ++M
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM

A0A5D2P1I7 Uncharacterized protein1.0e-1565.08Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM
        FLIGL KFG+GDW++I+  +V+T++PTQVASH+QK+FLRQ   +++RKRSSIHDITTVD ++M
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESM

SwissProt top hitse value%identityAlignment
B8A9B2 Transcription factor MYBS13.2e-1458.62Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTV
        FL+GL KFG+GDW++I+   V++++PTQVASH+QK+F+R     +DR+RSSIHDIT+V
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTV

Q2V9B0 Transcription factor MYB1R18.6e-1244.19Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESMARLLADRQRPSLPPAPPFSVNTT
        FL+GL K G+GDW+ I+   V T++PTQVASH+QK+FLR+    + R+RSS+ DITT D  S+  +     +  +P   P ++ TT
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESMARLLADRQRPSLPPAPPFSVNTT

Q8LH59 Transcription factor MYBS13.2e-1458.62Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTV
        FL+GL KFG+GDW++I+   V++++PTQVASH+QK+F+R     +DR+RSSIHDIT+V
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTV

Q8S9H7 Transcription factor DIVARICATA1.3e-1551.19Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESMARLLADRQRPS----LPPAPP
        FL+GL K+G+GDW+NI+   V+T++PTQVASH+QK+F+RQ    +D++R+SIHDITTV+       L+D Q PS     PP+ P
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESMARLLADRQRPS----LPPAPP

Q9FNN6 Transcription factor SRM13.2e-1458.62Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTV
        FL+GL K+G+GDW++I+   V+T++PTQVASH+QK+F+R     +DR+RSSIHDIT+V
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTV

Arabidopsis top hitse value%identityAlignment
AT1G49010.1 Duplicated homeodomain-like superfamily protein1.0e-1546.15Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESMARLLADRQRPSLPPAPPFSVNTTPPPRP
        FL+GL KFG+GDW++I+   V++++PTQVASH+QK+F+R     +DR+RSSIHDITTV+ ++ A +    Q+P +    P      P P+P
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESMARLLADRQRPSLPPAPPFSVNTTPPPRP

AT2G38090.1 Duplicated homeodomain-like superfamily protein1.1e-1754.32Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVD-PESMARLLADRQRPSLPPAPP
        FL+GL K+G+GDW+NIA   V T++PTQVASH+QK+F+RQ    +D++RSSIHDITTV+ P+S     AD    + P +PP
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVD-PESMARLLADRQRPSLPPAPP

AT5G01200.1 Duplicated homeodomain-like superfamily protein2.4e-1751.09Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVD-PESMARLLADRQRPSLPPAPPFSVNTTPPPRP
        FL+GL K+G+GDW+NIA   V T++PTQVASH+QK+FLRQ    +D++RSSIHDITTV+ P++ A   A     +L P P  S +    P P
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVD-PESMARLLADRQRPSLPPAPPFSVNTTPPPRP

AT5G04760.1 Duplicated homeodomain-like superfamily protein4.9e-1864.41Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVD
        FLIGL ++G+GDW++I+  +V+T++PTQVASH+QK+FLRQ   +++RKRSSIHDITTVD
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVD

AT5G58900.1 Homeodomain-like transcriptional regulator4.1e-1757.58Show/hide
Query:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESMARL
        FL+GL K+G+GDW+NI+   V+T++PTQVASH+QK+F+RQ    +D++R+SIHDITTV+ E  A L
Subjt:  FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESMARL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTTGATTGGACTCCTGAAATTTGGGGAAGGAGATTGGAAAAACATAGCTACCAAAATTGTGCTCACTAAATCACCCACCCAAGTCGCAAGCCACAGTCAGAAATTCTT
CCTCCGACAGCGCGTGCCGGAGCAGGATCGGAAAAGGTCGAGCATTCACGACATCACCACCGTAGATCCAGAGTCAATGGCGCGGTTACTCGCCGACCGGCAACGGCCTT
CGTTGCCACCGGCACCCCCATTCTCGGTTAACACTACACCTCCGCCGCGGCCG
mRNA sequenceShow/hide mRNA sequence
TTTTTGATTGGACTCCTGAAATTTGGGGAAGGAGATTGGAAAAACATAGCTACCAAAATTGTGCTCACTAAATCACCCACCCAAGTCGCAAGCCACAGTCAGAAATTCTT
CCTCCGACAGCGCGTGCCGGAGCAGGATCGGAAAAGGTCGAGCATTCACGACATCACCACCGTAGATCCAGAGTCAATGGCGCGGTTACTCGCCGACCGGCAACGGCCTT
CGTTGCCACCGGCACCCCCATTCTCGGTTAACACTACACCTCCGCCGCGGCCG
Protein sequenceShow/hide protein sequence
FLIGLLKFGEGDWKNIATKIVLTKSPTQVASHSQKFFLRQRVPEQDRKRSSIHDITTVDPESMARLLADRQRPSLPPAPPFSVNTTPPPRP