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MS015551 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015551
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription factor bHLH160
Genome locationscaffold627:50383..53433
RNA-Seq ExpressionMS015551
SyntenyMS015551
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR015660 - Achaete-scute transcription factor-related
IPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022159073.1 transcription factor bHLH160 [Momordica charantia]2.0e-4451.52Show/hide
Query:  MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNNIEETHFSKGAIMGLEEEKGNFTSPIGVEASNSNANAKKEEHNAKERERRMKLSQTYFSLRS
        MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNNIEETHFSK                    ASNSNANAKKEEHNAKERERRMKLSQTYFSLRS
Subjt:  MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNNIEETHFSKGAIMGLEEEKGNFTSPIGVEASNSNANAKKEEHNAKERERRMKLSQTYFSLRS

Query:  LLPNSRRS-------------------------------------------------------------------------------------------K
        LLPNSRRS                                                                                           K
Subjt:  LLPNSRRS-------------------------------------------------------------------------------------------K

Query:  AEAEGITIIGASTVSVSGDHPTLTCHLHVQV
        AEAEGITIIGASTVSVSGDHPTLTCHLHVQ+
Subjt:  AEAEGITIIGASTVSVSGDHPTLTCHLHVQV

XP_022963582.1 transcription factor bHLH160 [Cucurbita moschata]1.5e-1245.16Show/hide
Query:  MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNNIEETHFSKGAIMGLEEE------KGNFTSPIGVEASNSNANAKKEEHNAKERERRMKLSQT
        MA+APWE      D+N G    E   L P    ++ G  I  +     A++GLEE+      + N   P  + A+   +NAKKEEHNA+ER+RRM+LSQ 
Subjt:  MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNNIEETHFSKGAIMGLEEE------KGNFTSPIGVEASNSNANAKKEEHNAKERERRMKLSQT

Query:  YFSLRSLLPNSRRSKAEAEGITII
        YFSLRSLLPN+RRSK      TII
Subjt:  YFSLRSLLPNSRRSKAEAEGITII

XP_023553728.1 transcription factor bHLH160 [Cucurbita pepo subsp. pepo]5.8e-1244.35Show/hide
Query:  MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNNIEETHFSKGAIMGLEEE------KGNFTSPIGVEASNSNANAKKEEHNAKERERRMKLSQT
        MA+ PWE      D+N G    E   L P    ++ G  I  +     A++GLEE+      + N   P  + A+   +NAKKEEHNA+ER+RRM+LSQ 
Subjt:  MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNNIEETHFSKGAIMGLEEE------KGNFTSPIGVEASNSNANAKKEEHNAKERERRMKLSQT

Query:  YFSLRSLLPNSRRSKAEAEGITII
        YFSLRSLLPN+RRSK      TII
Subjt:  YFSLRSLLPNSRRSKAEAEGITII

XP_031743831.1 transcription factor bHLH160 [Cucumis sativus]1.2e-1230.96Show/hide
Query:  MALAPWEEDILNIDQNYGFVERENP---------PLFPIF---------------PPSINGNNIEETHFSKGAIMGLEE-----------EKGNFTSPIG
        M+L PWEE IL ID++ G  E+ENP          L  IF               P  I G+ +E++      ++GLEE           E      P  
Subjt:  MALAPWEEDILNIDQNYGFVERENP---------PLFPIF---------------PPSINGNNIEETHFSKGAIMGLEE-----------EKGNFTSPIG

Query:  V-----EASNSN-ANAKKEEHNAKERERRMKLSQTYFSLRSLLPNSRRS---------------------------------------------------
        +     E SNSN ANAKKEEHNA+ER+RR+KLS +YFSLRSLLPN+RRS                                                   
Subjt:  V-----EASNSN-ANAKKEEHNAKERERRMKLSQTYFSLRSLLPNSRRS---------------------------------------------------

Query:  ------------------------------------------------KAEAEGITIIGASTVSVSGDHPTLTCHLHVQVI
                                                        KAEAEG+ IIGASTVSVS DH  LT HLH+Q++
Subjt:  ------------------------------------------------KAEAEGITIIGASTVSVSGDHPTLTCHLHVQVI

XP_038888939.1 transcription factor bHLH160 [Benincasa hispida]6.8e-1330.3Show/hide
Query:  MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNN--IEETHFSK-----------------GAIMGLE-------EEKGNFTSPIGVEASN----
        M+L  WEE IL +++N G  E ENP L  +   S++ NN  +EET  S+                   ++GLE       E++ +   P  +  +N    
Subjt:  MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNN--IEETHFSK-----------------GAIMGLE-------EEKGNFTSPIGVEASN----

Query:  --SNANAKKEEHNAKERERRMKLSQTYFSLRSLLPNSRRS------------------------------------------------------------
          + ANAKKEEHNA+ER+RRM+LS +YFSLRSLLPN+RRS                                                            
Subjt:  --SNANAKKEEHNAKERERRMKLSQTYFSLRSLLPNSRRS------------------------------------------------------------

Query:  --------------------------------KAEAEGITIIGASTVSVSGDHPTLTCHLHVQV
                                        KA+AEG+ IIGASTVSVS DH TL+ HLH+Q+
Subjt:  --------------------------------KAEAEGITIIGASTVSVSGDHPTLTCHLHVQV

TrEMBL top hitse value%identityAlignment
A0A0A0KGG0 BHLH domain-containing protein9.9e-2647.8Show/hide
Query:  MALAPWEEDILNIDQNYGFVERENP---------PLFPIF---------------PPSINGNNIEETHFSKGAIMGLEE-----------EKGNFTSPIG
        M+L PWEE IL ID++ G  E+ENP          L  IF               P  I G+ +E++      ++GLEE           E      P  
Subjt:  MALAPWEEDILNIDQNYGFVERENP---------PLFPIF---------------PPSINGNNIEETHFSKGAIMGLEE-----------EKGNFTSPIG

Query:  V-----EASNSN-ANAKKEEHNAKERERRMKLSQTYFSLRSLLPNSRRSKAEAEGITIIGASTVSVSGDHPTLTCHLHVQVI
        +     E SNSN ANAKKEEHNA+ER+RR+KLS +YFSLRSLLPN+RRSKAEAEG+ IIGASTVSVS DH  LT HLH+Q++
Subjt:  V-----EASNSN-ANAKKEEHNAKERERRMKLSQTYFSLRSLLPNSRRSKAEAEGITIIGASTVSVSGDHPTLTCHLHVQVI

A0A1S3BLZ5 transcription factor bHLH1001.8e-1150Show/hide
Query:  DQNYGFVERENPPLFPIFPPSINGNNIEETHFSKGAIMGLEEEKGNFTSPIGVEASNSN-ANAKKEEHNAKERERRMKLSQTYFSLRSLLPNSRRSKAEA
        D  YG +EREN  LFP  PPSIN +N                           E SNSN  NAKKEEHNA+ER+RR++LS +YFSLRSLLPN+RRSK   
Subjt:  DQNYGFVERENPPLFPIFPPSINGNNIEETHFSKGAIMGLEEEKGNFTSPIGVEASNSN-ANAKKEEHNAKERERRMKLSQTYFSLRSLLPNSRRSKAEA

Query:  EGITII
           TII
Subjt:  EGITII

A0A6J1DXT5 transcription factor bHLH1609.5e-4551.52Show/hide
Query:  MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNNIEETHFSKGAIMGLEEEKGNFTSPIGVEASNSNANAKKEEHNAKERERRMKLSQTYFSLRS
        MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNNIEETHFSK                    ASNSNANAKKEEHNAKERERRMKLSQTYFSLRS
Subjt:  MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNNIEETHFSKGAIMGLEEEKGNFTSPIGVEASNSNANAKKEEHNAKERERRMKLSQTYFSLRS

Query:  LLPNSRRS-------------------------------------------------------------------------------------------K
        LLPNSRRS                                                                                           K
Subjt:  LLPNSRRS-------------------------------------------------------------------------------------------K

Query:  AEAEGITIIGASTVSVSGDHPTLTCHLHVQV
        AEAEGITIIGASTVSVSGDHPTLTCHLHVQ+
Subjt:  AEAEGITIIGASTVSVSGDHPTLTCHLHVQV

A0A6J1HFM3 transcription factor bHLH1607.4e-1345.16Show/hide
Query:  MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNNIEETHFSKGAIMGLEEE------KGNFTSPIGVEASNSNANAKKEEHNAKERERRMKLSQT
        MA+APWE      D+N G    E   L P    ++ G  I  +     A++GLEE+      + N   P  + A+   +NAKKEEHNA+ER+RRM+LSQ 
Subjt:  MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNNIEETHFSKGAIMGLEEE------KGNFTSPIGVEASNSNANAKKEEHNAKERERRMKLSQT

Query:  YFSLRSLLPNSRRSKAEAEGITII
        YFSLRSLLPN+RRSK      TII
Subjt:  YFSLRSLLPNSRRSKAEAEGITII

A0A6J1HVK8 transcription factor bHLH1603.7e-1243.55Show/hide
Query:  MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNNIEETHFSKGAIMGLEEE------KGNFTSPIGVEASNSNANAKKEEHNAKERERRMKLSQT
        MA+ PWE      D+N G  E + P           G+  E       A++GLEE+      + N   P  + A+   +NAKKEEHNA+ER+RRM+LSQ 
Subjt:  MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNNIEETHFSKGAIMGLEEE------KGNFTSPIGVEASNSNANAKKEEHNAKERERRMKLSQT

Query:  YFSLRSLLPNSRRSKAEAEGITII
        YFSLRSLLPN+RRSK      TII
Subjt:  YFSLRSLLPNSRRSKAEAEGITII

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G56980.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.6e-0440.58Show/hide
Query:  EETHFSKGAIMGLEEEKGNFTSPIGVEASNSNANAKKEEHNAKERERRMKLSQTYFSLRSLLPNSRRSK
        EET+ +  A+   +   G   S  G E  N+    KK  HNA ER+RR K++  + SLRS LP S +SK
Subjt:  EETHFSKGAIMGLEEEKGNFTSPIGVEASNSNANAKKEEHNAKERERRMKLSQTYFSLRSLLPNSRRSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTGGCACCATGGGAGGAGGATATATTGAATATTGATCAAAACTATGGATTTGTAGAGAGAGAAAACCCACCATTATTTCCAATATTTCCACCATCCATTAATGG
CAATAATATTGAAGAAACCCATTTCTCCAAAGGTGCAATAATGGGTTTGGAGGAGGAGAAGGGGAATTTTACCTCTCCAATTGGAGTTGAAGCCTCAAATTCAAATGCAA
ATGCAAAGAAAGAGGAACACAATGCTAAGGAGAGAGAGAGGAGGATGAAGCTCTCTCAAACCTACTTTTCCCTTCGTTCATTGCTTCCAAATTCTAGACGATCAAAGGCT
GAAGCAGAAGGCATCACAATCATTGGTGCTTCCACAGTTTCTGTTTCTGGAGATCATCCCACCCTCACCTGCCATTTGCATGTCCAGGTAATA
mRNA sequenceShow/hide mRNA sequence
ATGGCATTGGCACCATGGGAGGAGGATATATTGAATATTGATCAAAACTATGGATTTGTAGAGAGAGAAAACCCACCATTATTTCCAATATTTCCACCATCCATTAATGG
CAATAATATTGAAGAAACCCATTTCTCCAAAGGTGCAATAATGGGTTTGGAGGAGGAGAAGGGGAATTTTACCTCTCCAATTGGAGTTGAAGCCTCAAATTCAAATGCAA
ATGCAAAGAAAGAGGAACACAATGCTAAGGAGAGAGAGAGGAGGATGAAGCTCTCTCAAACCTACTTTTCCCTTCGTTCATTGCTTCCAAATTCTAGACGATCAAAGGCT
GAAGCAGAAGGCATCACAATCATTGGTGCTTCCACAGTTTCTGTTTCTGGAGATCATCCCACCCTCACCTGCCATTTGCATGTCCAGGTAATA
Protein sequenceShow/hide protein sequence
MALAPWEEDILNIDQNYGFVERENPPLFPIFPPSINGNNIEETHFSKGAIMGLEEEKGNFTSPIGVEASNSNANAKKEEHNAKERERRMKLSQTYFSLRSLLPNSRRSKA
EAEGITIIGASTVSVSGDHPTLTCHLHVQVI