CuGenDBv2

Gene ID	MS015556
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribonuclease H
Genome location	scaffold627:117898..118108
RNA-Seq Expression	MS015556
Synteny	MS015556
Gene Ontology terms	GO:0090304 - nucleic acid metabolic process (biological process) GO:0016779 - nucleotidyltransferase activity (molecular function) GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_009124577.2 uncharacterized protein LOC103849567 [Brassica rapa]

1.1e-13

55.71

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Query:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLIK-PTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS
        W+ +CIPK +GGLGFRDLESFNQA   K+ WR+++ P  L+AR+L+ +YF D   L A+ K  ASY WKS
Subjt:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLIK-PTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS

XP_013645843.2 uncharacterized protein LOC106350515 [Brassica napus]

1.1e-13

55.71

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Query:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLIK-PTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS
        W+ +CIPK +GGLGFRDLESFNQA   K+ WR+++ P  L+AR+L+ +YF D   L A+ K  ASY WKS
Subjt:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLIK-PTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS

XP_013657066.1 uncharacterized protein LOC106361809 [Brassica napus]

1.1e-13

57.14

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Query:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLIK-PTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS
        W+ +CIPK +GGLGFRDLESFNQA   K+ WR+++ P  L+ARVL+ +YF D   LKA+ K  +SY WKS
Subjt:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLIK-PTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS

XP_013658143.2 uncharacterized protein LOC106362852 [Brassica napus]

3.3e-13

54.29

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Query:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLIK-PTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS
        W+ +C+PK +GGLGFRDLE+FNQA   K+ WR+++ P+ L+AR+LK +YF D   L+A  K  ASY WKS
Subjt:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLIK-PTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS

XP_022545183.1 uncharacterized protein LOC111199409 [Brassica napus]

1.5e-13

57.14

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Query:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLIK-PTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS
        W+ +CIPK +GGLGFRDLESFNQA   K+ WR+++ P  L+ARVL+ +YF D   LKA+ K  +SY WKS
Subjt:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLIK-PTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS

TrEMBL top hits

e value

%identity

Alignment

A0A2K3MXM6 Ribonuclease H (Fragment)

8.0e-13

58.57

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Query:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS
        W  +C  K  GGLGFRDL +FN+A  AK+ WRLI KPTSLVA+VLK KYF +  FL A  K   SY W+S
Subjt:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS

A0A2K3N038 zf-RVT domain-containing protein

8.0e-13

58.57

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Query:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS
        W  +C  K  GGLGFRDL +FN+A  AK+ WRLI KPTSLVA+VLK KYF +  FL A  K   SY W+S
Subjt:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS

A0A2P6SAP1 Putative RNA-directed DNA polymerase

8.0e-13

51.43

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Query:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLIK-PTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS
        W+ +C+PK++GGLGFR++  FNQA  AK+ WR+I+ P SL+AR+ K KYF +  F+KA     +SY WKS
Subjt:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLIK-PTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS

A0A392MB40 Reverse transcriptase domain-containing protein (Fragment)

2.8e-13

55.71

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Query:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS
        WQ IC PK QGG+GFR+L +FN+A  AK+ WRLI  P+S+VA+VLK KY+ + +FL+A  K + SY W+S
Subjt:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS

A0A453KW74 Uncharacterized protein

8.6e-15

57.14

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Query:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS
        W+ +C PK +GGLGFRDL++FNQA  AK++WR++  P+SLVARVLK +YFRD+  L A+C  +ASY ++S
Subjt:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

5.4e-06

39.44

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Query:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKY----FRDTRFLKASCKMSASYR
        W  +C PK +GGLG R  +S N+A  +K  WRL+ +  SL   VL++KY     RD+R+L      S+++R
Subjt:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKY----FRDTRFLKASCKMSASYR

P93295 Uncharacterized mitochondrial protein AtMg00310

5.2e-09

45.07

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Query:  WQNICIPK-SQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS
        WQ +C  K   GGLGFRDL  FNQA  AK+S+R+I +P +L++R+L+ +YF  +  ++ S     SY W+S
Subjt:  WQNICIPK-SQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

6.3e-10

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Query:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS
        W ++   K++GG+GF+D+E+FN A   K+ WR++ +P SL+A+V K +YF  +  L A      S+ WKS
Subjt:  WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

3.7e-10

45.07

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Query:  WQNICIPK-SQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS
        WQ +C  K   GGLGFRDL  FNQA  AK+S+R+I +P +L++R+L+ +YF  +  ++ S     SY W+S
Subjt:  WQNICIPK-SQGGLGFRDLESFNQAPSAKKSWRLI-KPTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS

Sequences

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CDS sequence

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TGGCAAAATATTTGCATTCCAAAAAGTCAAGGTGGTCTAGGCTTTCGAGACTTGGAAAGTTTCAACCAAGCTCCTTCGGCAAAGAAAAGTTGGAGATTGATTAAACCAAC
CTCTTTGGTGGCAAGGGTTCTAAAACGCAAGTATTTTCGAGATACAAGATTCCTTAAGGCTAGTTGTAAAATGAGTGCTTCATACAGGTGGAAGAGC

mRNA sequence

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Protein sequence

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WQNICIPKSQGGLGFRDLESFNQAPSAKKSWRLIKPTSLVARVLKRKYFRDTRFLKASCKMSASYRWKS

MS015556 (gene) of Bitter gourd (TR) v1 genome