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MS015560 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015560
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box protein CPR30-like
Genome locationscaffold627:137680..138126
RNA-Seq ExpressionMS015560
SyntenyMS015560
Gene Ontology termsNA
InterPro domainsIPR017451 - F-box associated interaction domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022572.1 F-box protein CPR30, partial [Cucurbita argyrosperma subsp. argyrosperma]3.8e-5470.06Show/hide
Query:  NIFLWNPSIRRVVAL--PSDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG
        +I LWNPSI+RVVA+   SDIIT Y AP K ALGFGFD  A+DYKVVRLLYF+D      K+SPKVELYE+ TG WRV  ++AP C++VKSEW QAF NG
Subjt:  NIFLWNPSIRRVVAL--PSDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG

Query:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII
         VHWVAY E+  GY+CFILRFDIVEECFS+I L +CLVN SPCDLKV+VLGGALSI+
Subjt:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII

XP_022158898.1 F-box protein CPR30-like [Momordica charantia]1.5e-5573.89Show/hide
Query:  NIFLWNPSIRRVVALP--SDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG
        +I LWNPSI+RVVALP  SDI T   AP   ALGFGFDS A+DYKVVRLLYF+D      K+SPKVELYE+ TGSWRV GN+AP C++V+SEWRQAFVNG
Subjt:  NIFLWNPSIRRVVALP--SDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG

Query:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII
         VHWVAY EN TGYRCFILRFD VEE FSII L ECLVN SP DLKVA+LGGALSI+
Subjt:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII

XP_022927695.1 F-box protein CPR30-like [Cucurbita moschata]3.8e-5470.06Show/hide
Query:  NIFLWNPSIRRVVAL--PSDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG
        +I LWNPSI+RVVA+   SDIIT Y AP K ALGFGFD  A+DYKVVRLLYF+D      K+SPKVELYE+ TG WRV  ++AP C++VKSEW QAF NG
Subjt:  NIFLWNPSIRRVVAL--PSDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG

Query:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII
         VHWVAY E+  GY+CFILRFDIVEECFS+I L +CLVN SPCDLKV+VLGGALSI+
Subjt:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII

XP_022988821.1 F-box protein CPR1-like [Cucurbita maxima]2.2e-5469.43Show/hide
Query:  NIFLWNPSIRRVVAL--PSDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG
        +I LWNPSI+RVVA+   SDIIT Y AP K ALGFGFDS A+DYKVVRLLYF+D      K+SPKVELYE+ TG WRV  ++AP C++VKSEW QAF NG
Subjt:  NIFLWNPSIRRVVAL--PSDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG

Query:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII
         VHWVAY E+  GY+CFILRFDIVEECFS++ L  CLVN SPCDLKV+VLGGALS++
Subjt:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII

XP_023531653.1 F-box protein CPR1-like [Cucurbita pepo subsp. pepo]3.8e-5470.06Show/hide
Query:  NIFLWNPSIRRVVAL--PSDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG
        +I LWNPSI+RVVA+   SDIIT Y AP K ALGFGFD  A+DYKVVRLLYF+D      K+SPKVELYE+ TG WRV  ++AP C++VKSEW QAF NG
Subjt:  NIFLWNPSIRRVVAL--PSDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG

Query:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII
         VHWVAY E+  GY+CFILRFDIVEECFS+I L +CLVN SPCDLKV+VLGGALSI+
Subjt:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII

TrEMBL top hitse value%identityAlignment
A0A0A0KEH9 F-box domain-containing protein7.0e-5468.59Show/hide
Query:  NIFLWNPSIRRVVALP--SDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG
        ++ LWNPSI+RVV +P  SD +T Y  P   ALGFGFDSCA D+KVVRLLYF D      K+SPKVELYE+GTGSWR   N+AP C++V+S W QAFVNG
Subjt:  NIFLWNPSIRRVVALP--SDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG

Query:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSI
         VHW+AY E GTGYRCFILRFDIV+ECFSII L +CL N SP DLKV VLGGALSI
Subjt:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSI

A0A1S3BLB6 F-box protein CPR30-like3.6e-5066.03Show/hide
Query:  IFLWNPSIRRVVALP--SDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFD------DKKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNGV
        + LWNPSI+RVVA+P  S+ ++ Y  P   ALGFGFDS A+D+KVVRLLYF+       K+SPKVELYE+GTGSWR   N+AP C++VKS W QAF +G 
Subjt:  IFLWNPSIRRVVALP--SDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFD------DKKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNGV

Query:  VHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII
        VHW+AY E   GYRCFILRFDIV+ECFS IDL +CL N SP DLKVAVLGGALSII
Subjt:  VHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII

A0A6J1DX53 F-box protein CPR30-like7.4e-5673.89Show/hide
Query:  NIFLWNPSIRRVVALP--SDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG
        +I LWNPSI+RVVALP  SDI T   AP   ALGFGFDS A+DYKVVRLLYF+D      K+SPKVELYE+ TGSWRV GN+AP C++V+SEWRQAFVNG
Subjt:  NIFLWNPSIRRVVALP--SDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG

Query:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII
         VHWVAY EN TGYRCFILRFD VEE FSII L ECLVN SP DLKVA+LGGALSI+
Subjt:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII

A0A6J1EPQ1 F-box protein CPR30-like1.8e-5470.06Show/hide
Query:  NIFLWNPSIRRVVAL--PSDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG
        +I LWNPSI+RVVA+   SDIIT Y AP K ALGFGFD  A+DYKVVRLLYF+D      K+SPKVELYE+ TG WRV  ++AP C++VKSEW QAF NG
Subjt:  NIFLWNPSIRRVVAL--PSDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG

Query:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII
         VHWVAY E+  GY+CFILRFDIVEECFS+I L +CLVN SPCDLKV+VLGGALSI+
Subjt:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII

A0A6J1JIB9 F-box protein CPR1-like1.1e-5469.43Show/hide
Query:  NIFLWNPSIRRVVAL--PSDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG
        +I LWNPSI+RVVA+   SDIIT Y AP K ALGFGFDS A+DYKVVRLLYF+D      K+SPKVELYE+ TG WRV  ++AP C++VKSEW QAF NG
Subjt:  NIFLWNPSIRRVVAL--PSDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDD------KKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNG

Query:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII
         VHWVAY E+  GY+CFILRFDIVEECFS++ L  CLVN SPCDLKV+VLGGALS++
Subjt:  VVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII

SwissProt top hitse value%identityAlignment
Q9CAE7 Putative F-box protein At3g104301.6e-1034.88Show/hide
Query:  NIFLWNPSIRRVVAL-PSDIITKYCAPGKCALGFGFDSCASD-YKVVRLLYF----DDKKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNGVV
        N+ +WNP +R++  + PS  +   C  G   LGFG+D    D YK++R  Y     DD+  PK ++YE  +GSWR    EA     +  E     VNG +
Subjt:  NIFLWNPSIRRVVAL-PSDIITKYCAPGKCALGFGFDSCASD-YKVVRLLYF----DDKKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNGVV

Query:  HWVAYGENGTGYRCFILRFDIVEECFSII
        +W+   E     + FIL FD  +E F+ I
Subjt:  HWVAYGENGTGYRCFILRFDIVEECFSII

Q9SU30 F-box protein CPR12.3e-0626.04Show/hide
Query:  NIFLWNPSIRRVVALPS---DIITKYCAPGKCALGFGFDSCASDYKVVRLLYFD-DKKSP-------KVELYELGTGSWRVTGNEAPCCQMV-----KSE
        ++ ++NPS R++  LP    D+       G    G G+DS + DYKVVR++ F  D +         +V+++ L   SW+   + A   Q++        
Subjt:  NIFLWNPSIRRVVALPS---DIITKYCAPGKCALGFGFDSCASDYKVVRLLYFD-DKKSP-------KVELYELGTGSWRVTGNEAPCCQMV-----KSE

Query:  WRQAF---VNGVVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCS-PCDLKVAVLGGALSII
        +R+ +       +HWV     G      I+RFD+  E F I+   E + N +    + + VL G L ++
Subjt:  WRQAF---VNGVVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCS-PCDLKVAVLGGALSII

Arabidopsis top hitse value%identityAlignment
AT1G49790.1 F-box associated ubiquitination effector family protein2.7e-0528.42Show/hide
Query:  PGKCALGFGFDSCASDYKVVRLLYFDDKKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNGVVHWVAYGENGTGYRCFILRFDIVEECF
        PG   +GFG D+    YK+VR+L+    ++   ++ ++  G WR    +      V    + A VNG ++W     +    RC +L FD+  E F
Subjt:  PGKCALGFGFDSCASDYKVVRLLYFDDKKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNGVVHWVAYGENGTGYRCFILRFDIVEECF

AT2G30380.1 Plant protein of unknown function (DUF641)7.5e-0835.79Show/hide
Query:  PGKCALGFGFDSCASDYKVVRLLYFDDKKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNGVVHWVAYGENGTGYRCFILRFDIVEECF
        PG  A+GFG D     YK+VR+ Y     + + E+ +L  G WR   N  P    V+     AFVNG ++W    +  TGY+  IL  D+  E F
Subjt:  PGKCALGFGFDSCASDYKVVRLLYFDDKKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNGVVHWVAYGENGTGYRCFILRFDIVEECF

AT3G10430.1 F-box and associated interaction domains-containing protein1.1e-1134.88Show/hide
Query:  NIFLWNPSIRRVVAL-PSDIITKYCAPGKCALGFGFDSCASD-YKVVRLLYF----DDKKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNGVV
        N+ +WNP +R++  + PS  +   C  G   LGFG+D    D YK++R  Y     DD+  PK ++YE  +GSWR    EA     +  E     VNG +
Subjt:  NIFLWNPSIRRVVAL-PSDIITKYCAPGKCALGFGFDSCASD-YKVVRLLYF----DDKKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNGVV

Query:  HWVAYGENGTGYRCFILRFDIVEECFSII
        +W+   E     + FIL FD  +E F+ I
Subjt:  HWVAYGENGTGYRCFILRFDIVEECFSII

AT4G12560.1 F-box and associated interaction domains-containing protein1.7e-0726.04Show/hide
Query:  NIFLWNPSIRRVVALPS---DIITKYCAPGKCALGFGFDSCASDYKVVRLLYFD-DKKSP-------KVELYELGTGSWRVTGNEAPCCQMV-----KSE
        ++ ++NPS R++  LP    D+       G    G G+DS + DYKVVR++ F  D +         +V+++ L   SW+   + A   Q++        
Subjt:  NIFLWNPSIRRVVALPS---DIITKYCAPGKCALGFGFDSCASDYKVVRLLYFD-DKKSP-------KVELYELGTGSWRVTGNEAPCCQMV-----KSE

Query:  WRQAF---VNGVVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCS-PCDLKVAVLGGALSII
        +R+ +       +HWV     G      I+RFD+  E F I+   E + N +    + + VL G L ++
Subjt:  WRQAF---VNGVVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCS-PCDLKVAVLGGALSII

AT4G12560.2 F-box and associated interaction domains-containing protein1.7e-0726.04Show/hide
Query:  NIFLWNPSIRRVVALPS---DIITKYCAPGKCALGFGFDSCASDYKVVRLLYFD-DKKSP-------KVELYELGTGSWRVTGNEAPCCQMV-----KSE
        ++ ++NPS R++  LP    D+       G    G G+DS + DYKVVR++ F  D +         +V+++ L   SW+   + A   Q++        
Subjt:  NIFLWNPSIRRVVALPS---DIITKYCAPGKCALGFGFDSCASDYKVVRLLYFD-DKKSP-------KVELYELGTGSWRVTGNEAPCCQMV-----KSE

Query:  WRQAF---VNGVVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCS-PCDLKVAVLGGALSII
        +R+ +       +HWV     G      I+RFD+  E F I+   E + N +    + + VL G L ++
Subjt:  WRQAF---VNGVVHWVAYGENGTGYRCFILRFDIVEECFSIIDLSECLVNCS-PCDLKVAVLGGALSII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACATTTTCTTGTGGAACCCATCAATTCGAAGAGTTGTAGCACTTCCTAGCGATATTATCACCAAGTATTGCGCCCCAGGTAAATGTGCACTTGGATTCGGCTTTGATTC
TTGTGCCAGCGACTACAAGGTGGTTAGATTGTTGTATTTCGATGATAAAAAATCTCCTAAAGTTGAGTTATATGAGCTTGGAACAGGTTCATGGAGAGTGACTGGCAACG
AAGCTCCTTGCTGCCAAATGGTTAAATCGGAATGGAGGCAAGCATTTGTGAATGGGGTTGTCCATTGGGTTGCTTACGGGGAAAATGGCACAGGTTATAGGTGTTTCATT
TTGAGGTTTGATATAGTTGAGGAGTGCTTCAGTATAATAGATTTGTCAGAATGTTTGGTTAATTGCTCACCCTGTGACTTGAAAGTTGCTGTGCTAGGAGGAGCACTTTC
AATCATT
mRNA sequenceShow/hide mRNA sequence
AACATTTTCTTGTGGAACCCATCAATTCGAAGAGTTGTAGCACTTCCTAGCGATATTATCACCAAGTATTGCGCCCCAGGTAAATGTGCACTTGGATTCGGCTTTGATTC
TTGTGCCAGCGACTACAAGGTGGTTAGATTGTTGTATTTCGATGATAAAAAATCTCCTAAAGTTGAGTTATATGAGCTTGGAACAGGTTCATGGAGAGTGACTGGCAACG
AAGCTCCTTGCTGCCAAATGGTTAAATCGGAATGGAGGCAAGCATTTGTGAATGGGGTTGTCCATTGGGTTGCTTACGGGGAAAATGGCACAGGTTATAGGTGTTTCATT
TTGAGGTTTGATATAGTTGAGGAGTGCTTCAGTATAATAGATTTGTCAGAATGTTTGGTTAATTGCTCACCCTGTGACTTGAAAGTTGCTGTGCTAGGAGGAGCACTTTC
AATCATT
Protein sequenceShow/hide protein sequence
NIFLWNPSIRRVVALPSDIITKYCAPGKCALGFGFDSCASDYKVVRLLYFDDKKSPKVELYELGTGSWRVTGNEAPCCQMVKSEWRQAFVNGVVHWVAYGENGTGYRCFI
LRFDIVEECFSIIDLSECLVNCSPCDLKVAVLGGALSII