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MS015570 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015570
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold627:262167..262322
RNA-Seq ExpressionMS015570
SyntenyMS015570
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044449.1 hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa]1.6e-0444.23Show/hide
Query:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
        G FS S+ +   +  S+WL  IY P+K  +RP FW++L NL  +C   WILG
Subjt:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
TYJ99326.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-0444.23Show/hide
Query:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
        G FS S+ +   +  S+WL  IY P+K  +RP FW++L NL  +C   WILG
Subjt:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
TYK29577.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-0444.23Show/hide
Query:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
        G FS S+ +   +  S+WL  IY P+K  +RP FW++L NL  +C   WILG
Subjt:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]1.1e-0550Show/hide
Query:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
        G FS S+   LADNF++WL G+Y P K   R  FWQ+L +L+ LC   W+LG
Subjt:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
TrEMBL top hitse value%identityAlignment
A0A5A7TTA1 DUF4283 domain-containing protein7.9e-0544.23Show/hide
Query:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
        G FS S+ +   +  S+WL  IY P+K  +RP FW++L NL  +C   WILG
Subjt:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
A0A5D3BJP3 LINE-1 retrotransposable element ORF2 protein7.9e-0544.23Show/hide
Query:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
        G FS S+ +   +  S+WL  IY P+K  +RP FW++L NL  +C   WILG
Subjt:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
A0A5D3E0F6 LINE-1 retrotransposable element ORF2 protein7.9e-0544.23Show/hide
Query:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
        G FS S+ +   +  S+WL  IY P+K  +RP FW++L NL  +C   WILG
Subjt:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
A0A6J1CVN2 uncharacterized protein LOC1110146575.5e-0650Show/hide
Query:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
        G FS S+   LADNF++WL G+Y P K   R  FWQ+L +L+ LC   W+LG
Subjt:  GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTACTTTCTCTCAATCCCTTCTTATTTCTTTGGCTGACAATTTTAGTTTTTGGCTCTTAGGAATCTATTGCCCATCCAAAGCCACCCATAGACCACAATTTTGGCAAAA
ATTGTCAAATCTATCTTTCCTTTGTAGTAAGAATTGGATTCTTGGG
mRNA sequenceShow/hide mRNA sequence
GGTACTTTCTCTCAATCCCTTCTTATTTCTTTGGCTGACAATTTTAGTTTTTGGCTCTTAGGAATCTATTGCCCATCCAAAGCCACCCATAGACCACAATTTTGGCAAAA
ATTGTCAAATCTATCTTTCCTTTGTAGTAAGAATTGGATTCTTGGG
Protein sequenceShow/hide protein sequence
GTFSQSLLISLADNFSFWLLGIYCPSKATHRPQFWQKLSNLSFLCSKNWILG