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MS015574 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015574
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold627:313671..314084
RNA-Seq ExpressionMS015574
SyntenyMS015574
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]3.9e-1340.88Show/hide
Query:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI
        W PP   FFK+N DA F       GL I+I ++   V L+A   +   + V  AE LA   G+ LAI+A L P Q+E+DS Q F  L    ED SE+G +
Subjt:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI

Query:  LADIRSLCSL--IGGVLFSFTPCTGNAAAHKLAALAL
         + IR + S   IGG  FSF    GN+ AH LA + +
Subjt:  LADIRSLCSL--IGGVLFSFTPCTGNAAAHKLAALAL

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]7.1e-1540.44Show/hide
Query:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIIC-NARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGS
        W P  +G FK+ TDA F ++    GLG+II  + RG+V  +A   L   ASVD AEALA   G+ +A++  + P+ LE+DSL+ +    +  E LS+ GS
Subjt:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIIC-NARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGS

Query:  ILADIRSLCSLIGGVLFSFTPCTGNAAAHKLAALAL
        I+  +++  +    V +SFT  TGN  AH LA  AL
Subjt:  ILADIRSLCSLIGGVLFSFTPCTGNAAAHKLAALAL

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.2e-1441.48Show/hide
Query:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI
        W PP    +KINTDA F+A     GLGIII N RG+V  +A   L    SVD AEA+    G+ LA    + P+ LE+DS + F    +  EDLSE G I
Subjt:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI

Query:  LADIRSLCSLIGGVLFSFTPCTGNAAAHKLAALAL
        +   ++  +      F+F    GN AAH LA  AL
Subjt:  LADIRSLCSLIGGVLFSFTPCTGNAAAHKLAALAL

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]3.0e-1341.61Show/hide
Query:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI
        W PP     K+N DA F       G+G+II ++ G V+L A   L R + VD  E  A++ GI LA++A     Q+E+DSL+ F  L     D SEVG +
Subjt:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI

Query:  LADIR-SLCSLIGGVLFSFTPCTGNAAAHKLAALALS
         + I+  L S    V FSFT   GNA AH LA LAL+
Subjt:  LADIR-SLCSLIGGVLFSFTPCTGNAAAHKLAALALS

XP_023904177.1 uncharacterized protein LOC112015942 [Quercus suber]3.0e-1338.97Show/hide
Query:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI
        W PP   FFK+N DA       R G G +I N  GEV  A +   P  +S D+AE LA    +  A+DA    L +E DS+   + L     DLS VG++
Subjt:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI

Query:  LADIRSLCSLIGGVLFSFTPCTGNAAAHKLAALALS
        +ADI+ L S +  V FS+     N  AH LA  A S
Subjt:  LADIRSLCSLIGGVLFSFTPCTGNAAAHKLAALALS

TrEMBL top hitse value%identityAlignment
A0A6J1C467 uncharacterized protein LOC1110077751.9e-1340.88Show/hide
Query:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI
        W PP   FFK+N DA F       GL I+I ++   V L+A   +   + V  AE LA   G+ LAI+A L P Q+E+DS Q F  L    ED SE+G +
Subjt:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI

Query:  LADIRSLCSL--IGGVLFSFTPCTGNAAAHKLAALAL
         + IR + S   IGG  FSF    GN+ AH LA + +
Subjt:  LADIRSLCSL--IGGVLFSFTPCTGNAAAHKLAALAL

A0A6J1CDQ4 uncharacterized protein LOC1110105333.5e-1540.44Show/hide
Query:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIIC-NARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGS
        W P  +G FK+ TDA F ++    GLG+II  + RG+V  +A   L   ASVD AEALA   G+ +A++  + P+ LE+DSL+ +    +  E LS+ GS
Subjt:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIIC-NARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGS

Query:  ILADIRSLCSLIGGVLFSFTPCTGNAAAHKLAALAL
        I+  +++  +    V +SFT  TGN  AH LA  AL
Subjt:  ILADIRSLCSLIGGVLFSFTPCTGNAAAHKLAALAL

A0A6J1CIF1 uncharacterized protein LOC1110112375.9e-1541.48Show/hide
Query:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI
        W PP    +KINTDA F+A     GLGIII N RG+V  +A   L    SVD AEA+    G+ LA    + P+ LE+DS + F    +  EDLSE G I
Subjt:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI

Query:  LADIRSLCSLIGGVLFSFTPCTGNAAAHKLAALAL
        +   ++  +      F+F    GN AAH LA  AL
Subjt:  LADIRSLCSLIGGVLFSFTPCTGNAAAHKLAALAL

A0A6J1DBJ7 uncharacterized protein LOC1110189731.5e-1341.61Show/hide
Query:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI
        W PP     K+N DA F       G+G+II ++ G V+L A   L R + VD  E  A++ GI LA++A     Q+E+DSL+ F  L     D SEVG +
Subjt:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI

Query:  LADIR-SLCSLIGGVLFSFTPCTGNAAAHKLAALALS
         + I+  L S    V FSFT   GNA AH LA LAL+
Subjt:  LADIR-SLCSLIGGVLFSFTPCTGNAAAHKLAALALS

V4UMR3 RNase H domain-containing protein (Fragment)1.9e-1332.37Show/hide
Query:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI
        W  PP  ++K+N DA   +   R G+G+++CN+ GEV  A+  ++     ++  EA+A+H G+ L +D  L P  +ESDS      ++  +    EVG +
Subjt:  WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSI

Query:  LADIRS-LCSLIGGVLFSFTPCTGNAAAHKLAALALSRS
        ++D++  L S        F P + N  AH L+ LAL  S
Subjt:  LADIRS-LCSLIGGVLFSFTPCTGNAAAHKLAALALSRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGTCTCCTCCTCCGGACGGCTTTTTCAAAATTAATACAGATGCTGGTTTCGTTGCTGTCCCGAGTCGGGGTGGTTTAGGGATAATTATTTGCAATGCTAGGGGTGAGGT
TTTTCTTGCTGCTGCTACCTCTCTCCCGCGGTGTGCTTCGGTGGATCAAGCGGAGGCTTTGGCTTTGCACCCGGGGATTTCGCTTGCTATTGATGCCGACCTCTTCCCTT
TGCAACTTGAGTCAGACTCACTGCAGTGCTTCCGTGGGCTTGACAAGATGGTAGAGGATCTGTCGGAAGTGGGGTCTATTCTTGCTGATATTCGGTCCCTCTGCTCCCTT
ATTGGTGGTGTTCTGTTTAGCTTCACGCCTTGTACAGGAAATGCTGCGGCTCACAAGCTGGCGGCTTTGGCACTTTCTCGCTCT
mRNA sequenceShow/hide mRNA sequence
TGGTCTCCTCCTCCGGACGGCTTTTTCAAAATTAATACAGATGCTGGTTTCGTTGCTGTCCCGAGTCGGGGTGGTTTAGGGATAATTATTTGCAATGCTAGGGGTGAGGT
TTTTCTTGCTGCTGCTACCTCTCTCCCGCGGTGTGCTTCGGTGGATCAAGCGGAGGCTTTGGCTTTGCACCCGGGGATTTCGCTTGCTATTGATGCCGACCTCTTCCCTT
TGCAACTTGAGTCAGACTCACTGCAGTGCTTCCGTGGGCTTGACAAGATGGTAGAGGATCTGTCGGAAGTGGGGTCTATTCTTGCTGATATTCGGTCCCTCTGCTCCCTT
ATTGGTGGTGTTCTGTTTAGCTTCACGCCTTGTACAGGAAATGCTGCGGCTCACAAGCTGGCGGCTTTGGCACTTTCTCGCTCT
Protein sequenceShow/hide protein sequence
WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSILADIRSLCSL
IGGVLFSFTPCTGNAAAHKLAALALSRS