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MS015604 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015604
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationscaffold444:7705..7848
RNA-Seq ExpressionMS015604
SyntenyMS015604
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV64810.1 hypothetical protein CFOL_v3_08325, partial [Cephalotus follicularis]2.0e-0450Show/hide
Query:  VCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC
        VCK +G+GIV +K +DG+++ L  VRH+ NLK+ +ISL  L+S+ C
Subjt:  VCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC

KAA0065687.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.0e-0450Show/hide
Query:  NDVCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC
        ++ CK++G+G V+LK  DG+   L+N+RHV +LKR LI L ML+S+ C
Subjt:  NDVCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC

PNX56512.1 hypothetical protein L195_g058242, partial [Trifolium pratense]2.6e-0450Show/hide
Query:  NDVCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC
        N  CK++G G + +KM+DG+++ L NVRHV NL++ LISL +LE   C
Subjt:  NDVCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC

XP_038891593.1 uncharacterized protein LOC120080985 [Benincasa hispida]8.9e-0556.25Show/hide
Query:  NDVCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC
        N+ CK+ GV +VSLK+  G +KLL+NVRHV  LKR LISL +L+++ C
Subjt:  NDVCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC

XP_038904482.1 uncharacterized protein LOC120090851 [Benincasa hispida]3.0e-0558.33Show/hide
Query:  NDVCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC
        N+ C V+G+  VSLK+ D S+KLL+NVRHV  LKR LISL M +S+ C
Subjt:  NDVCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC

TrEMBL top hitse value%identityAlignment
A0A151R0C5 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-0460Show/hide
Query:  CKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC
        CKV G+G V +K+NDGS+K    VRHV  LKR LISL ML  V C
Subjt:  CKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC

A0A1Q3B9Y9 Uncharacterized protein (Fragment)9.6e-0550Show/hide
Query:  VCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC
        VCK +G+GIV +K +DG+++ L  VRH+ NLK+ +ISL  L+S+ C
Subjt:  VCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC

A0A2K3JR43 Uncharacterized protein (Fragment)1.2e-0450Show/hide
Query:  NDVCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC
        N  CK++G G + +KM+DG+++ L NVRHV NL++ LISL +LE   C
Subjt:  NDVCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC

A0A5A7UZX2 Retrovirus-related Pol polyprotein from transposon TNT 1-944.7e-0456.82Show/hide
Query:  KVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC
        K++G+G V+LK  DG+  LL+NVRHV +LK  LISL ML+S+ C
Subjt:  KVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC

A0A5D3CAI4 Retrovirus-related Pol polyprotein from transposon TNT 1-949.6e-0550Show/hide
Query:  NDVCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC
        ++ CK++G+G V+LK  DG+   L+N+RHV +LKR LI L ML+S+ C
Subjt:  NDVCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATGACGTCTGCAAGGTAATTGGAGTTGGTATTGTCTCTCTTAAAATGAACGATGGTTCTCTAAAATTGCTCCAAAATGTGAGACATGTATCAAACCTCAAAAGATGTTT
AATTTCACTAAGTATGTTAGAGTCAGTCAGCTGT
mRNA sequenceShow/hide mRNA sequence
AATGACGTCTGCAAGGTAATTGGAGTTGGTATTGTCTCTCTTAAAATGAACGATGGTTCTCTAAAATTGCTCCAAAATGTGAGACATGTATCAAACCTCAAAAGATGTTT
AATTTCACTAAGTATGTTAGAGTCAGTCAGCTGT
Protein sequenceShow/hide protein sequence
NDVCKVIGVGIVSLKMNDGSLKLLQNVRHVSNLKRCLISLSMLESVSC