; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015605 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015605
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpolygalacturonase-like
Genome locationscaffold444:18809..18919
RNA-Seq ExpressionMS015605
SyntenyMS015605
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0068064.1 polygalacturonase [Cucumis melo var. makuwa]4.4e-0466.67Show/hide
Query:  EDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
        E+++LTY+NQ A A C +VGGI AGL+QPTSCF
Subjt:  EDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
XP_008460449.1 PREDICTED: polygalacturonase-like [Cucumis melo]4.4e-0466.67Show/hide
Query:  EDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
        E+++LTY+NQ A A C +VGGI AGL+QPTSCF
Subjt:  EDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
XP_011652823.2 polygalacturonase [Cucumis sativus]1.2e-0462.16Show/hide
Query:  KMSKEDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
        ++  E++KLTY+NQ A A C +VGGI AGL+QPTSCF
Subjt:  KMSKEDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
XP_011652824.2 polygalacturonase [Cucumis sativus]2.6e-0459.46Show/hide
Query:  KMSKEDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
        ++  +++KLTY+NQ A A C +VGGI AGL+QPTSCF
Subjt:  KMSKEDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
XP_038888714.1 polygalacturonase-like [Benincasa hispida]6.8e-0562.16Show/hide
Query:  KMSKEDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
        ++  ED++LTY+NQ A A C +VGGI AGL+QPTSCF
Subjt:  KMSKEDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
TrEMBL top hitse value%identityAlignment
A0A0A0LCF2 Uncharacterized protein5.6e-0562.16Show/hide
Query:  KMSKEDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
        ++  E++KLTY+NQ A A C +VGGI AGL+QPTSCF
Subjt:  KMSKEDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
A0A1S3CCL4 polygalacturonase-like2.1e-0466.67Show/hide
Query:  EDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
        E+++LTY+NQ A A C +VGGI AGL+QPTSCF
Subjt:  EDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
A0A5A7VKX0 Polygalacturonase2.1e-0466.67Show/hide
Query:  EDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
        E+++LTY+NQ A A C +VGGI AGL+QPTSCF
Subjt:  EDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
A0A5D3C3E8 Polygalacturonase2.1e-0466.67Show/hide
Query:  EDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
        E+++LTY+NQ A A C +VGGI AGL+QPTSCF
Subjt:  EDIKLTYINQIAAAICRHVGGITAGLLQPTSCF
M5X980 Uncharacterized protein6.2e-0458.33Show/hide
Query:  KMSKEDIKLTYINQIAAAICRHVGGITAGLLQPTSC
        K+  E++KLTY NQ+A A C H GG  AG++QPTSC
Subjt:  KMSKEDIKLTYINQIAAAICRHVGGITAGLLQPTSC
SwissProt top hitse value%identityAlignment
P48979 Polygalacturonase9.3e-0559.38Show/hide
Query:  EDIKLTYINQIAAAICRHVGGITAGLLQPTSC
        ED+KLTY NQ A + C H  G T G++QPTSC
Subjt:  EDIKLTYINQIAAAICRHVGGITAGLLQPTSC
Arabidopsis top hitse value%identityAlignment
AT2G43870.1 Pectin lyase-like superfamily protein7.3e-0562.07Show/hide
Query:  EDIKLTYINQIAAAICRHVGGITAGLLQP
        ED+KLTY N+ AA+ C H GGI AG  QP
Subjt:  EDIKLTYINQIAAAICRHVGGITAGLLQP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGATGAGTAAGGAAGACATAAAGCTTACTTATATCAATCAAATAGCCGCAGCAATTTGTAGACATGTAGGAGGCATTACTGCAGGTCTTCTTCAACCCACTAGTTGCTT
C
mRNA sequenceShow/hide mRNA sequence
AAGATGAGTAAGGAAGACATAAAGCTTACTTATATCAATCAAATAGCCGCAGCAATTTGTAGACATGTAGGAGGCATTACTGCAGGTCTTCTTCAACCCACTAGTTGCTT
C
Protein sequenceShow/hide protein sequence
KMSKEDIKLTYINQIAAAICRHVGGITAGLLQPTSCF