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MS015611 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015611
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein FAR1-RELATED SEQUENCE 4-like
Genome locationscaffold444:68465..68731
RNA-Seq ExpressionMS015611
SyntenyMS015611
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151685.1 uncharacterized protein LOC111019601 [Momordica charantia]2.6e-1859.26Show/hide
Query:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT
        YSVDSLI +YAEP + V HMS+WK+P D+ P  + P   V R GRR T+RI+   ER  VNKCSRCG   HNR+TC+NPIT
Subjt:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT

XP_022154400.1 uncharacterized protein LOC111021677 [Momordica charantia]1.4e-1960.49Show/hide
Query:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT
        YSVDSLI +YAEP +PV HMS+WK+P D++P  + P   V R GRR T+ I+   ER  VNKCSRCG  GHNR+TC+NPIT
Subjt:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT

XP_022155370.1 uncharacterized protein LOC111022514 [Momordica charantia]2.1e-2062.96Show/hide
Query:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT
        YSVDSLI +YAEP +PV HMS+WK+P D++P  I P   V R GRR T+RI+   ER  VNKCSRCG  GHNR+TC+NPIT
Subjt:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT

XP_022156308.1 uncharacterized protein LOC111023235 [Momordica charantia]6.2e-2060.49Show/hide
Query:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT
        Y+VDSLI +YAEP +PV HMS+WK+P D++P  + P G V R GR  T+RI+   ER  VNKCSRCG  GHNR+TC+NPIT
Subjt:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT

XP_022159086.1 uncharacterized protein LOC111025530 [Momordica charantia]2.6e-1856.79Show/hide
Query:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT
        YSVDSLI +YAEP +P+ HMS+WK+P +++   + P G V R GRR T++I+   ER  VNKCSRC   GHNR+TC+NPIT
Subjt:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT

TrEMBL top hitse value%identityAlignment
A0A6J1DBW0 uncharacterized protein LOC1110196011.3e-1859.26Show/hide
Query:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT
        YSVDSLI +YAEP + V HMS+WK+P D+ P  + P   V R GRR T+RI+   ER  VNKCSRCG   HNR+TC+NPIT
Subjt:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT

A0A6J1DJH9 uncharacterized protein LOC1110216776.7e-2060.49Show/hide
Query:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT
        YSVDSLI +YAEP +PV HMS+WK+P D++P  + P   V R GRR T+ I+   ER  VNKCSRCG  GHNR+TC+NPIT
Subjt:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT

A0A6J1DMA3 uncharacterized protein LOC1110225141.0e-2062.96Show/hide
Query:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT
        YSVDSLI +YAEP +PV HMS+WK+P D++P  I P   V R GRR T+RI+   ER  VNKCSRCG  GHNR+TC+NPIT
Subjt:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT

A0A6J1DQ99 uncharacterized protein LOC1110232353.0e-2060.49Show/hide
Query:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT
        Y+VDSLI +YAEP +PV HMS+WK+P D++P  + P G V R GR  T+RI+   ER  VNKCSRCG  GHNR+TC+NPIT
Subjt:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT

A0A6J1E2V3 uncharacterized protein LOC1110255301.3e-1856.79Show/hide
Query:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT
        YSVDSLI +YAEP +P+ HMS+WK+P +++   + P G V R GRR T++I+   ER  VNKCSRC   GHNR+TC+NPIT
Subjt:  YSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPIT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CACTACAGCGTGGATTCCCTTATTATCTCGTATGCTGAGCCAAGCATGCCCGTCGACCACATGTCTAAATGGAAGAAACCAGATGATTTCGAGCCTAGGACCATCCATCC
ACTGGGTTACGTTCCACGTGTAGGTCGTCGACATACCAAAAGAATCTCATATGCTTGCGAGCGATTTTGGGTAAACAAGTGCAGCCGGTGTGGGAAGATGGGTCACAACA
GAAAAACCTGTTCCAACCCAATAACAACCAGGACGTGTGACGAAAGG
mRNA sequenceShow/hide mRNA sequence
CACTACAGCGTGGATTCCCTTATTATCTCGTATGCTGAGCCAAGCATGCCCGTCGACCACATGTCTAAATGGAAGAAACCAGATGATTTCGAGCCTAGGACCATCCATCC
ACTGGGTTACGTTCCACGTGTAGGTCGTCGACATACCAAAAGAATCTCATATGCTTGCGAGCGATTTTGGGTAAACAAGTGCAGCCGGTGTGGGAAGATGGGTCACAACA
GAAAAACCTGTTCCAACCCAATAACAACCAGGACGTGTGACGAAAGG
Protein sequenceShow/hide protein sequence
HYSVDSLIISYAEPSMPVDHMSKWKKPDDFEPRTIHPLGYVPRVGRRHTKRISYACERFWVNKCSRCGKMGHNRKTCSNPITTRTCDER