; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015616 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015616
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionU6 snRNA phosphodiesterase
Genome locationscaffold444:293448..293635
RNA-Seq ExpressionMS015616
SyntenyMS015616
Gene Ontology termsGO:0016070 - RNA metabolic process (biological process)
GO:0000175 - 3'-5'-exoribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055091.1 U6 snRNA phosphodiesterase [Cucumis melo var. makuwa]1.7e-0560.32Show/hide
Query:  SSPELFPP--SPLPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
        S+P+ F    S LP PPPPLSLL FP        VLDDLPI Q TR RSFP V+GN  LHVYI
Subjt:  SSPELFPP--SPLPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
KAG7017094.1 U6 snRNA phosphodiesterase [Cucurbita argyrosperma subsp. argyrosperma]1.1e-0462.75Show/hide
Query:  LPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
        LP PPPPLSLL FP       S LDDLPI Q +R RSFP V+GN  LH+YI
Subjt:  LPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
XP_004143673.1 U6 snRNA phosphodiesterase [Cucumis sativus]1.7e-0566.67Show/hide
Query:  LPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
        LP PPPPLSLL FP        VLDDLPI Q TR RSFP V+GN  LHVYI
Subjt:  LPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
XP_008467330.1 PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo]1.7e-0560.32Show/hide
Query:  SSPELFPP--SPLPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
        S+P+ F    S LP PPPPLSLL FP        VLDDLPI Q TR RSFP V+GN  LHVYI
Subjt:  SSPELFPP--SPLPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
XP_022155865.1 U6 snRNA phosphodiesterase [Momordica charantia]1.9e-0766.1Show/hide
Query:  ELFPPSPLPP-PPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
        +L PP P P  PPPPLSLL FP      +S L DLPI QPTRFRSFP VEGN  LHVYI
Subjt:  ELFPPSPLPP-PPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
TrEMBL top hitse value%identityAlignment
A0A0A0KPH5 U6 snRNA phosphodiesterase8.4e-0666.67Show/hide
Query:  LPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
        LP PPPPLSLL FP        VLDDLPI Q TR RSFP V+GN  LHVYI
Subjt:  LPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
A0A1S3CTB0 U6 snRNA phosphodiesterase8.4e-0660.32Show/hide
Query:  SSPELFPP--SPLPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
        S+P+ F    S LP PPPPLSLL FP        VLDDLPI Q TR RSFP V+GN  LHVYI
Subjt:  SSPELFPP--SPLPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
A0A5A7UND6 U6 snRNA phosphodiesterase8.4e-0660.32Show/hide
Query:  SSPELFPP--SPLPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
        S+P+ F    S LP PPPPLSLL FP        VLDDLPI Q TR RSFP V+GN  LHVYI
Subjt:  SSPELFPP--SPLPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
A0A6J1DNL4 U6 snRNA phosphodiesterase9.0e-0866.1Show/hide
Query:  ELFPPSPLPP-PPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
        +L PP P P  PPPPLSLL FP      +S L DLPI QPTRFRSFP VEGN  LHVYI
Subjt:  ELFPPSPLPP-PPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
A0A6J1EQH7 U6 snRNA phosphodiesterase7.1e-0562.75Show/hide
Query:  LPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
        LP PPPPLSLL FP       S LDDLPI Q  R RSFP V+GN  LH+YI
Subjt:  LPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCATCGCCAGAGTTATTTCCACCTTCGCCTCTGCCTCCGCCTCCGCCGCCTCTCTCACTTCTCATTTTCCCATTCATCTGTATACCTCTTCTCTCTGTCTTAGATGACTT
ACCAATCACTCAACCCACTCGATTTCGGAGCTTCCCTCGTGTCGAAGGAAACTGTGTCCTACACGTCTATATT
mRNA sequenceShow/hide mRNA sequence
TCATCGCCAGAGTTATTTCCACCTTCGCCTCTGCCTCCGCCTCCGCCGCCTCTCTCACTTCTCATTTTCCCATTCATCTGTATACCTCTTCTCTCTGTCTTAGATGACTT
ACCAATCACTCAACCCACTCGATTTCGGAGCTTCCCTCGTGTCGAAGGAAACTGTGTCCTACACGTCTATATT
Protein sequenceShow/hide protein sequence
SSPELFPPSPLPPPPPPLSLLIFPFICIPLLSVLDDLPITQPTRFRSFPRVEGNCVLHVYI