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MS015619 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015619
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpentatricopeptide repeat-containing protein At1g10910, chloroplastic
Genome locationscaffold444:317455..317847
RNA-Seq ExpressionMS015619
SyntenyMS015619
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581658.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]8.5e-2670.83Show/hide
Query:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFN-GQKRHSKSYLERQSAIRQVQNCSELGPALAR
        MEL VIGNGY +H+L T+LPTP S+MASAP +VPRL NHR NS+A VPK+P   P S N KL N GQ+RHSKSYLERQSAI QV++CSEL PALAR
Subjt:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFN-GQKRHSKSYLERQSAIRQVQNCSELGPALAR
KAG7018152.1 Pentatricopeptide repeat-containing protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]8.5e-2670.83Show/hide
Query:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFN-GQKRHSKSYLERQSAIRQVQNCSELGPALAR
        MEL VIGNGY +H+L T+LPTP S+MASAP +VPRL NHR NS+A VPK+P   P S N KL N GQ+RHSKSYLERQSAI QV++CSEL PALAR
Subjt:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFN-GQKRHSKSYLERQSAIRQVQNCSELGPALAR
XP_022156960.1 pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Momordica charantia]2.0e-4398.94Show/hide
Query:  MELCVIGNGYQHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFNGQKRHSKSYLERQSAIRQVQNCSELGPALAR
        MELCVIGNGYQHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKE PIHPSSQNRKLFNGQKRHSKSYLERQSAIRQVQNCSELGPALAR
Subjt:  MELCVIGNGYQHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFNGQKRHSKSYLERQSAIRQVQNCSELGPALAR
XP_022930554.1 pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Cucurbita moschata]2.5e-2569.79Show/hide
Query:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFN-GQKRHSKSYLERQSAIRQVQNCSELGPALAR
        MEL VIGNGY +H+L T+LPTP S+MASAP +VPRL NHR NS+A +PK+P   P S N KL N GQ+RHSKSYLERQSAI QV++CSEL PALAR
Subjt:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFN-GQKRHSKSYLERQSAIRQVQNCSELGPALAR
XP_023528492.1 pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Cucurbita pepo subsp. pepo]1.5e-2570.83Show/hide
Query:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFN-GQKRHSKSYLERQSAIRQVQNCSELGPALAR
        MEL VIGNGY +H+L T+LPTP S+MASAP +VPRL NHR NS+A VPK P   P S N KL N GQ+RHSKSYLERQSAI QV++CSEL PALAR
Subjt:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFN-GQKRHSKSYLERQSAIRQVQNCSELGPALAR
TrEMBL top hitse value%identityAlignment
A0A0A0LI66 Uncharacterized protein1.9e-2663.48Show/hide
Query:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFNG-QKRHSKSYLERQSAIRQVQNCSELGPALARLFFL
        MEL ++ NGY +HVL T+LPTP S+MASA  AV  + N++SNS+A +PKEP   P S N KL NG QKRHSKSYLERQSAI QV++CSEL PALAR FF 
Subjt:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFNG-QKRHSKSYLERQSAIRQVQNCSELGPALARLFFL

Query:  FL-AMCVWSLSLNCG
        +L A C W   LNCG
Subjt:  FL-AMCVWSLSLNCG
A0A1S3CN74 pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X14.6e-2569.79Show/hide
Query:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFNG-QKRHSKSYLERQSAIRQVQNCSELGPALAR
        MEL ++GNGY +HVL T+LPTP S+MASA  AVP L N++SNS+A +PKEP   P S N KLFNG QKRHSKSYLERQSAI QV++CSEL PALAR
Subjt:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFNG-QKRHSKSYLERQSAIRQVQNCSELGPALAR
A0A5A7URC2 Pentatricopeptide repeat-containing protein4.6e-2569.79Show/hide
Query:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFNG-QKRHSKSYLERQSAIRQVQNCSELGPALAR
        MEL ++GNGY +HVL T+LPTP S+MASA  AVP L N++SNS+A +PKEP   P S N KLFNG QKRHSKSYLERQSAI QV++CSEL PALAR
Subjt:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFNG-QKRHSKSYLERQSAIRQVQNCSELGPALAR
A0A6J1DRU4 pentatricopeptide repeat-containing protein At1g10910, chloroplastic9.8e-4498.94Show/hide
Query:  MELCVIGNGYQHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFNGQKRHSKSYLERQSAIRQVQNCSELGPALAR
        MELCVIGNGYQHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKE PIHPSSQNRKLFNGQKRHSKSYLERQSAIRQVQNCSELGPALAR
Subjt:  MELCVIGNGYQHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFNGQKRHSKSYLERQSAIRQVQNCSELGPALAR
A0A6J1ERS3 pentatricopeptide repeat-containing protein At1g10910, chloroplastic1.2e-2569.79Show/hide
Query:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFN-GQKRHSKSYLERQSAIRQVQNCSELGPALAR
        MEL VIGNGY +H+L T+LPTP S+MASAP +VPRL NHR NS+A +PK+P   P S N KL N GQ+RHSKSYLERQSAI QV++CSEL PALAR
Subjt:  MELCVIGNGY-QHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFN-GQKRHSKSYLERQSAIRQVQNCSELGPALAR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTCTGTGTTATTGGTAATGGATATCAGCATGTTCTGGCGACTCAGTTACCCACTCCTCCTTCTTTAATGGCTTCTGCACCGCGTGCTGTCCCCAGGCTCAGCAA
TCATCGCTCCAACTCTCTCGCAACCGTCCCTAAAGAGCCACCAATCCACCCCAGCTCTCAAAATCGTAAGCTCTTCAATGGTCAGAAGCGCCACTCCAAGTCATACCTAG
AGAGACAATCCGCTATTAGACAAGTTCAGAACTGCTCTGAGTTGGGTCCGGCTCTTGCGAGGTTGTTCTTTTTATTTCTTGCAATGTGTGTTTGGAGTTTGAGTTTGAAT
TGTGGGATTCACTTGCTTCGTTTTGATGCGTCTAAGGATGTTTTCTCCATTGTCAATGCTAGT
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTCTGTGTTATTGGTAATGGATATCAGCATGTTCTGGCGACTCAGTTACCCACTCCTCCTTCTTTAATGGCTTCTGCACCGCGTGCTGTCCCCAGGCTCAGCAA
TCATCGCTCCAACTCTCTCGCAACCGTCCCTAAAGAGCCACCAATCCACCCCAGCTCTCAAAATCGTAAGCTCTTCAATGGTCAGAAGCGCCACTCCAAGTCATACCTAG
AGAGACAATCCGCTATTAGACAAGTTCAGAACTGCTCTGAGTTGGGTCCGGCTCTTGCGAGGTTGTTCTTTTTATTTCTTGCAATGTGTGTTTGGAGTTTGAGTTTGAAT
TGTGGGATTCACTTGCTTCGTTTTGATGCGTCTAAGGATGTTTTCTCCATTGTCAATGCTAGT
Protein sequenceShow/hide protein sequence
MELCVIGNGYQHVLATQLPTPPSLMASAPRAVPRLSNHRSNSLATVPKEPPIHPSSQNRKLFNGQKRHSKSYLERQSAIRQVQNCSELGPALARLFFLFLAMCVWSLSLN
CGIHLLRFDASKDVFSIVNAS