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MS015621 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015621
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold444:329452..329634
RNA-Seq ExpressionMS015621
SyntenyMS015621
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032570.1 protein SAND [Cucumis melo var. makuwa]3.9e-0544.26Show/hide
Query:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY
        G+ DS+L  L++W++ + S   G LG + LK++N ALLAK   RF +E S LW +V+ SI+
Subjt:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY

KAA0035739.1 hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]1.7e-0545.9Show/hide
Query:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY
        G  DS++ +L+ W+  S+  + GGLG   +K+ N ALLAK G R+  E+S LW QVI SI+
Subjt:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY

RVW29080.1 putative ribonuclease H protein [Vitis vinifera]1.3e-0547.54Show/hide
Query:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY
        G+ + +   LIRW+V S   E GGLG     ++N ALL K   RF  E+SDLW++VI+SIY
Subjt:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY

RVX07809.1 hypothetical protein CK203_021935 [Vitis vinifera]7.8e-0649.18Show/hide
Query:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY
        G+E+ +   LIRW+V S   E GGLG     ++N ALL K   RF  E+S LWY+VI+SIY
Subjt:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY

TYK21876.1 hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa]2.3e-0545.9Show/hide
Query:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY
        G  DS++ +L+ W+  S+  + GGLG   +K+ N ALLAK G R+  E+S LW QVI SI+
Subjt:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY

TrEMBL top hitse value%identityAlignment
A0A438D0T1 Putative ribonuclease H protein6.4e-0647.54Show/hide
Query:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY
        G+ + +   LIRW+V S   E GGLG     ++N ALL K   RF  E+SDLW++VI+SIY
Subjt:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY

A0A438JFT8 Uncharacterized protein3.8e-0649.18Show/hide
Query:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY
        G+E+ +   LIRW+V S   E GGLG     ++N ALL K   RF  E+S LWY+VI+SIY
Subjt:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY

A0A5A7SP09 Vacuolar fusion protein MON1 homolog1.9e-0544.26Show/hide
Query:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY
        G+ DS+L  L++W++ + S   G LG + LK++N ALLAK   RF +E S LW +V+ SI+
Subjt:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY

A0A5A7T2Y0 zf-RVT domain-containing protein8.4e-0645.9Show/hide
Query:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY
        G  DS++ +L+ W+  S+  + GGLG   +K+ N ALLAK G R+  E+S LW QVI SI+
Subjt:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY

A0A5D3DE60 zf-RVT domain-containing protein1.1e-0545.9Show/hide
Query:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY
        G  DS++ +L+ W+  S+  + GGLG   +K+ N ALLAK G R+  E+S LW QVI SI+
Subjt:  GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTAGTGAGGATAGTAGGCTTAAGCGTTTAATAAGATGGGATGTATCTTCAAATTCAATAGAAGCTGGTGGTTTGGGCTCTGAAAGTCTAAAGGTGAAAAATCAGGCCTT
ACTTGCAAAAGGGGGAGGGAGATTCTGTAATGAACAAAGTGATCTTTGGTATCAAGTGATTTCGAGCATATAT
mRNA sequenceShow/hide mRNA sequence
GGTAGTGAGGATAGTAGGCTTAAGCGTTTAATAAGATGGGATGTATCTTCAAATTCAATAGAAGCTGGTGGTTTGGGCTCTGAAAGTCTAAAGGTGAAAAATCAGGCCTT
ACTTGCAAAAGGGGGAGGGAGATTCTGTAATGAACAAAGTGATCTTTGGTATCAAGTGATTTCGAGCATATAT
Protein sequenceShow/hide protein sequence
GSEDSRLKRLIRWDVSSNSIEAGGLGSESLKVKNQALLAKGGGRFCNEQSDLWYQVISSIY