; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015648 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015648
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S13, chloroplastic-like
Genome locationscaffold983:6340..6825
RNA-Seq ExpressionMS015648
SyntenyMS015648
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR001892 - Ribosomal protein S13
IPR010979 - Ribosomal protein S13-like, H2TH
IPR018269 - Ribosomal protein S13, conserved site
IPR027437 - 30s ribosomal protein S13, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578996.1 Small ribosomal subunit protein S13, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.6e-5385.94Show/hide
Query:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP
        L IESIH+KAG+EIPD+KPL++ALQYINGIGRSRA QVLAELHL NKLAKDLTKRE+V+L DEISKYMVGHELN CVKKDI RLQ IQCHRGIRHG+GLP
Subjt:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP

Query:  CRGQRTKTNARTMKSKQIVVAGKKKASR
        CRGQRTKTNARTMKSKQI  +GKKKASR
Subjt:  CRGQRTKTNARTMKSKQIVVAGKKKASR

KAG7016519.1 30S ribosomal protein S13, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-5385.16Show/hide
Query:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP
        L IESIH+KAG+EIPD+KPL++ALQYINGIGRSRA QVLAELHL NKLAKDLTKRE+V+L DEISKYMVGHELN CVKKDI RLQ IQCHRGIRHG+GLP
Subjt:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP

Query:  CRGQRTKTNARTMKSKQIVVAGKKKASR
        CRGQRTKTNARTMKSKQI  +GKKKAS+
Subjt:  CRGQRTKTNARTMKSKQIVVAGKKKASR

XP_022141627.1 30S ribosomal protein S13, chloroplastic-like [Momordica charantia]1.9e-6299.21Show/hide
Query:  IESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLPCR
        IESIHVKAGMEIPDDKPLRFALQYI+GIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLPCR
Subjt:  IESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLPCR

Query:  GQRTKTNARTMKSKQIVVAGKKKASR
        GQRTKTNARTMKSKQIVVAGKKKASR
Subjt:  GQRTKTNARTMKSKQIVVAGKKKASR

XP_022939154.1 30S ribosomal protein S13, chloroplastic-like [Cucurbita moschata]6.1e-5385.16Show/hide
Query:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP
        L I SIH+KAG+EIPD+KPL++ALQYINGIGRSRA QVLAELHL NKLAKDLTKRE+V+L DEISKYMVGHELN CVKKDI RLQ IQCHRGIRHG+GLP
Subjt:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP

Query:  CRGQRTKTNARTMKSKQIVVAGKKKASR
        CRGQRTKTNARTMKSKQI  +GKKKASR
Subjt:  CRGQRTKTNARTMKSKQIVVAGKKKASR

XP_023550656.1 30S ribosomal protein S13, chloroplastic [Cucurbita pepo subsp. pepo]5.5e-5486.72Show/hide
Query:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP
        L IESIH+KAGMEIPD+KPL++ALQYINGIGRSRA QVLAELHL NKLAKDLTKRE+V+L DEISKYMVGHELN CVKKDI RLQ IQCHRGIRHG+GLP
Subjt:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP

Query:  CRGQRTKTNARTMKSKQIVVAGKKKASR
        CRGQRTKTNARTMKSKQI  +GKKKASR
Subjt:  CRGQRTKTNARTMKSKQIVVAGKKKASR

TrEMBL top hitse value%identityAlignment
A0A0A0KMX9 Uncharacterized protein1.7e-4878.57Show/hide
Query:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP
        L I+SIH+ AGMEIPD KPL+FALQYINGIGR+RANQVLA+LHL NKL+KDLTK+EL+ L DEISKY VGHEL+ CV++DI RLQ+IQCHRGIRH QGLP
Subjt:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP

Query:  CRGQRTKTNARTMKSKQIVVAGKKKA
        CRGQRTKTNART+KSKQ  V GK+KA
Subjt:  CRGQRTKTNARTMKSKQIVVAGKKKA

A0A2P5D3D1 Ribosomal protein1.3e-3765.55Show/hide
Query:  IHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLPCRGQR
        I+VKAGMEIPDDK L FAL YI+GIGR+RA Q+L+EL++ NKLAK+LTKRE+ +LG+E+SKY +G EL SCV++D+ RL +I+C+RG RH  GLP RGQR
Subjt:  IHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLPCRGQR

Query:  TKTNARTMKSKQIVVAGKK
        TKTNART KS+++ VA +K
Subjt:  TKTNARTMKSKQIVVAGKK

A0A6J1CKC9 30S ribosomal protein S13, chloroplastic-like9.2e-6399.21Show/hide
Query:  IESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLPCR
        IESIHVKAGMEIPDDKPLRFALQYI+GIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLPCR
Subjt:  IESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLPCR

Query:  GQRTKTNARTMKSKQIVVAGKKKASR
        GQRTKTNARTMKSKQIVVAGKKKASR
Subjt:  GQRTKTNARTMKSKQIVVAGKKKASR

A0A6J1FGA3 30S ribosomal protein S13, chloroplastic-like3.0e-5385.16Show/hide
Query:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP
        L I SIH+KAG+EIPD+KPL++ALQYINGIGRSRA QVLAELHL NKLAKDLTKRE+V+L DEISKYMVGHELN CVKKDI RLQ IQCHRGIRHG+GLP
Subjt:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP

Query:  CRGQRTKTNARTMKSKQIVVAGKKKASR
        CRGQRTKTNARTMKSKQI  +GKKKASR
Subjt:  CRGQRTKTNARTMKSKQIVVAGKKKASR

A0A6J1JVL8 small ribosomal subunit protein S13, mitochondrial-like1.1e-5285.16Show/hide
Query:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP
        L IESIH+KAGMEIPD+KPL++ALQYINGIGRSRA QVLAELHL NKLAKDLTKRE+V+L DEISKYMVGHEL  CVKKDI RLQ IQCHRGIRHG+GLP
Subjt:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP

Query:  CRGQRTKTNARTMKSKQIVVAGKKKASR
        CRGQRTKTNARTMKSKQI  + KKKASR
Subjt:  CRGQRTKTNARTMKSKQIVVAGKKKASR

SwissProt top hitse value%identityAlignment
B0KCM5 30S ribosomal protein S133.8e-2150Show/hide
Query:  AGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLG-NKLAKDLTKRELVILGDEISK-YMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLPCRGQRTK
        AG+++P DK +  AL YI GIGRSR+N++LA+  +  +   KDLT+ E+  L + I K Y V  +L   V  +I RL +I C+RGIRH +GLP RGQRT+
Subjt:  AGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLG-NKLAKDLTKRELVILGDEISK-YMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLPCRGQRTK

Query:  TNARTMKSKQIVVAGKKK
        TNART K  +  VA KKK
Subjt:  TNARTMKSKQIVVAGKKK

P42732 30S ribosomal protein S13, chloroplastic1.9e-3356.78Show/hide
Query:  GMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLPCRGQRTKTNA
        G+EIP +K + ++LQYI+GIGR+RA Q+L +L + NK+ KD+ + EL+IL DE+SKYM+  +L       I RL+EIQC+RG+RH QGLPCRGQRTK N 
Subjt:  GMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLPCRGQRTKTNA

Query:  RTMKSKQIVVAGKKKASR
        RT+K K+I +AGKKK S+
Subjt:  RTMKSKQIVVAGKKKASR

P82163 30S ribosomal protein S13, chloroplastic1.3e-2953.17Show/hide
Query:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP
        L I+ + V   +EIP++K + ++LQYI+GIGRSRA Q+L +L L NKL K+L++ EL+ + DE++KYM+  +L       I RL+EIQC+RG+RH QGLP
Subjt:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP

Query:  CRGQRTKTNARTMK-SKQIVVAGKKK
        CRGQRTK N RT+K  K++ +AGKKK
Subjt:  CRGQRTKTNARTMK-SKQIVVAGKKK

Q8LPW2 Small ribosomal subunit protein S13, mitochondrial9.9e-3051.26Show/hide
Query:  LQIESIHVKAGM--EIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQG
        +++++I++  G+  EIPD+K L +ALQ ++GIGRS+A  ++AEL + NK  KDL+KREL  + + +SKY++G++L  CV++D+ RL  IQC+RGIRH   
Subjt:  LQIESIHVKAGM--EIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQG

Query:  LPCRGQRTKTNARTMKSKQ
        LPCRGQRT TNART +S++
Subjt:  LPCRGQRTKTNARTMKSKQ

Q9CA19 Small ribosomal subunit protein S13, mitochondrial1.7e-2950.78Show/hide
Query:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP
        L+++ I V    E+P++KPL+  LQ + GIGR +++QVL  L + NKLA+DLT +EL+ L +E+ ++  G EL   V  +I RL E+ C+RG RH  GLP
Subjt:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP

Query:  CRGQRTKTNARTMKSKQIVVAGKKKASR
        CRGQRT TNART K K + +AGKKKA R
Subjt:  CRGQRTKTNARTMKSKQIVVAGKKKASR

Arabidopsis top hitse value%identityAlignment
AT1G22780.1 Ribosomal protein S13/S18 family4.6e-0632.56Show/hide
Query:  LRFALQYINGIGRSRANQVLAELHLG-NKLAKDLTKRELVILGDEIS---------------------KY--MVGHELNSCVKKDIARLQEIQCHRGIRH
        + FAL  I GIGR  AN V  +  +  NK A +L+  E+  L   ++                     KY  +V + L+  ++ D+ RL++I+ HRG+RH
Subjt:  LRFALQYINGIGRSRANQVLAELHLG-NKLAKDLTKRELVILGDEIS---------------------KY--MVGHELNSCVKKDIARLQEIQCHRGIRH

Query:  GQGLPCRGQRTKTNARTMKSKQIVVAGKK
          GL  RGQ TKT  R  + K + V+ K+
Subjt:  GQGLPCRGQRTKTNARTMKSKQIVVAGKK

AT1G34030.1 Ribosomal protein S13/S18 family4.6e-0632.56Show/hide
Query:  LRFALQYINGIGRSRANQVLAELHLG-NKLAKDLTKRELVILGDEIS---------------------KY--MVGHELNSCVKKDIARLQEIQCHRGIRH
        + FAL  I GIGR  AN V  +  +  NK A +L+  E+  L   ++                     KY  +V + L+  ++ D+ RL++I+ HRG+RH
Subjt:  LRFALQYINGIGRSRANQVLAELHLG-NKLAKDLTKRELVILGDEIS---------------------KY--MVGHELNSCVKKDIARLQEIQCHRGIRH

Query:  GQGLPCRGQRTKTNARTMKSKQIVVAGKK
          GL  RGQ TKT  R  + K + V+ K+
Subjt:  GQGLPCRGQRTKTNARTMKSKQIVVAGKK

AT1G77750.1 Ribosomal protein S13/S18 family1.2e-3050.78Show/hide
Query:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP
        L+++ I V    E+P++KPL+  LQ + GIGR +++QVL  L + NKLA+DLT +EL+ L +E+ ++  G EL   V  +I RL E+ C+RG RH  GLP
Subjt:  LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLP

Query:  CRGQRTKTNARTMKSKQIVVAGKKKASR
        CRGQRT TNART K K + +AGKKKA R
Subjt:  CRGQRTKTNARTMKSKQIVVAGKKKASR

AT5G14320.1 Ribosomal protein S13/S18 family1.4e-3456.78Show/hide
Query:  GMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLPCRGQRTKTNA
        G+EIP +K + ++LQYI+GIGR+RA Q+L +L + NK+ KD+ + EL+IL DE+SKYM+  +L       I RL+EIQC+RG+RH QGLPCRGQRTK N 
Subjt:  GMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLPCRGQRTKTNA

Query:  RTMKSKQIVVAGKKKASR
        RT+K K+I +AGKKK S+
Subjt:  RTMKSKQIVVAGKKKASR

AT5G14320.2 Ribosomal protein S13/S18 family9.2e-1552.38Show/hide
Query:  GMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHEL
        G+EIP +K + ++LQYI+GIGR+RA Q+L +L + NK+ KD+ + EL+IL DE+SKYM+  +L
Subjt:  GMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGCAGATCGAGTCCATTCATGTAAAAGCGGGTATGGAGATTCCGGATGACAAGCCTCTCAGATTTGCGCTTCAGTATATTAATGGAATTGGCCGATCGAGAGCGAACCA
AGTTCTTGCAGAGCTTCACTTGGGGAACAAGCTTGCCAAGGATTTGACTAAGAGAGAACTCGTTATTCTTGGCGACGAAATTTCCAAGTACATGGTCGGACACGAGTTGA
ATAGCTGTGTTAAGAAGGATATCGCTAGGCTGCAGGAAATTCAGTGCCACAGAGGGATTAGGCATGGCCAAGGATTGCCGTGTAGAGGCCAGCGAACAAAGACCAACGCT
AGGACCATGAAATCAAAGCAGATCGTCGTTGCTGGAAAGAAGAAAGCTTCTCGT
mRNA sequenceShow/hide mRNA sequence
TTGCAGATCGAGTCCATTCATGTAAAAGCGGGTATGGAGATTCCGGATGACAAGCCTCTCAGATTTGCGCTTCAGTATATTAATGGAATTGGCCGATCGAGAGCGAACCA
AGTTCTTGCAGAGCTTCACTTGGGGAACAAGCTTGCCAAGGATTTGACTAAGAGAGAACTCGTTATTCTTGGCGACGAAATTTCCAAGTACATGGTCGGACACGAGTTGA
ATAGCTGTGTTAAGAAGGATATCGCTAGGCTGCAGGAAATTCAGTGCCACAGAGGGATTAGGCATGGCCAAGGATTGCCGTGTAGAGGCCAGCGAACAAAGACCAACGCT
AGGACCATGAAATCAAAGCAGATCGTCGTTGCTGGAAAGAAGAAAGCTTCTCGT
Protein sequenceShow/hide protein sequence
LQIESIHVKAGMEIPDDKPLRFALQYINGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGLPCRGQRTKTNA
RTMKSKQIVVAGKKKASR