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MS015649 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015649
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S13, chloroplastic-like
Genome locationscaffold983:8272..8394
RNA-Seq ExpressionMS015649
SyntenyMS015649
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047502.1 30S ribosomal protein S13 [Cucumis melo var. makuwa]1.6e-0778.05Show/hide
Query:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVNFL
        MAQ+LA+P+APSLSLICN RN NPLS TLSFPIS+PQV  L
Subjt:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVNFL
KAE8077399.1 hypothetical protein FH972_015966 [Carpinus fangiana]6.2e-0783.33Show/hide
Query:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSP
        MAQ+LAMP+APSLSLICNGRNPN LS +LSFPI+SP
Subjt:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSP
XP_008465819.1 PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo]1.6e-0778.05Show/hide
Query:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVNFL
        MAQ+LA+P+APSLSLICN RN NPLS TLSFPIS+PQV  L
Subjt:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVNFL
XP_022141626.1 30S ribosomal protein S13, chloroplastic-like [Momordica charantia]3.2e-1195.12Show/hide
Query:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVNFL
        MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQV  L
Subjt:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVNFL
XP_038876079.1 30S ribosomal protein S13, chloroplastic-like [Benincasa hispida]5.6e-0880.49Show/hide
Query:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVNFL
        MAQSLAMP+APSLS+ICN RN NPLS TLSFPIS+PQV  L
Subjt:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVNFL
TrEMBL top hitse value%identityAlignment
A0A1S3CPR4 30S ribosomal protein S13, chloroplastic7.9e-0878.05Show/hide
Query:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVNFL
        MAQ+LA+P+APSLSLICN RN NPLS TLSFPIS+PQV  L
Subjt:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVNFL
A0A2P6PWX9 Putative ribosomal protein S133.0e-0777.78Show/hide
Query:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSP
        MAQ+LAMP+APSLSL+CNGRNPNP STTLS P+ +P
Subjt:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSP
A0A5A7TVL6 30S ribosomal protein S137.9e-0878.05Show/hide
Query:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVNFL
        MAQ+LA+P+APSLSLICN RN NPLS TLSFPIS+PQV  L
Subjt:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVNFL
A0A5N6REZ1 Uncharacterized protein3.0e-0783.33Show/hide
Query:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSP
        MAQ+LAMP+APSLSLICNGRNPN LS +LSFPI+SP
Subjt:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSP
A0A6J1CJS2 30S ribosomal protein S13, chloroplastic-like1.5e-1195.12Show/hide
Query:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVNFL
        MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQV  L
Subjt:  MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVNFL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G14320.1 Ribosomal protein S13/S18 family5.2e-0463.89Show/hide
Query:  MAQSLAMPVAPSLSLICNGRNPNPLS-TTLSFPISS
        MAQ +AMPVA SLSLICN    NPLS  TL+ P S+
Subjt:  MAQSLAMPVAPSLSLICNGRNPNPLS-TTLSFPISS
AT5G14320.2 Ribosomal protein S13/S18 family5.2e-0463.89Show/hide
Query:  MAQSLAMPVAPSLSLICNGRNPNPLS-TTLSFPISS
        MAQ +AMPVA SLSLICN    NPLS  TL+ P S+
Subjt:  MAQSLAMPVAPSLSLICNGRNPNPLS-TTLSFPISS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCAGAGTTTAGCAATGCCCGTGGCTCCTTCGCTCTCCCTTATCTGCAATGGTCGAAACCCTAATCCGCTCTCTACCACCCTCTCCTTTCCCATTTCTAGCCCCCA
GGTTAATTTTCTC
mRNA sequenceShow/hide mRNA sequence
ATGGCGCAGAGTTTAGCAATGCCCGTGGCTCCTTCGCTCTCCCTTATCTGCAATGGTCGAAACCCTAATCCGCTCTCTACCACCCTCTCCTTTCCCATTTCTAGCCCCCA
GGTTAATTTTCTC
Protein sequenceShow/hide protein sequence
MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVNFL