; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015650 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015650
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S13
Genome locationscaffold983:9024..9515
RNA-Seq ExpressionMS015650
SyntenyMS015650
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001892 - Ribosomal protein S13
IPR010979 - Ribosomal protein S13-like, H2TH
IPR018269 - Ribosomal protein S13, conserved site
IPR019980 - Ribosomal protein S13, bacterial-type
IPR027437 - 30s ribosomal protein S13, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047502.1 30S ribosomal protein S13 [Cucumis melo var. makuwa]3.3e-6294.62Show/hide
Query:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
        VRGLQIKCVRVGGVEIPNNKR+QYSLQYIHGIGRNNAKKIL+DL+LENKITKDLSEEEL S+RDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
Subjt:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG

Query:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR
        LPCRGQRTKNNCRTLKGKKVAI GKKKAPR
Subjt:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR

XP_004140327.1 30S ribosomal protein S13, chloroplastic [Cucumis sativus]1.5e-6293.85Show/hide
Query:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
        VRGLQIKCVRVGGVEIPNNKR+QYSLQY+HGIGRNNAKKIL+DL++ENKITKDLSEEELISIRDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
Subjt:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG

Query:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR
        LPCRGQRTKNNCRTLKGKK+AI GKKKAPR
Subjt:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR

XP_008465819.1 PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo]3.3e-6294.62Show/hide
Query:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
        VRGLQIKCVRVGGVEIPNNKR+QYSLQYIHGIGRNNAKKIL+DL+LENKITKDLSEEEL S+RDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
Subjt:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG

Query:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR
        LPCRGQRTKNNCRTLKGKKVAI GKKKAPR
Subjt:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR

XP_022141626.1 30S ribosomal protein S13, chloroplastic-like [Momordica charantia]2.4e-65100Show/hide
Query:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
        VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
Subjt:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG

Query:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR
        LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR
Subjt:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR

XP_038876079.1 30S ribosomal protein S13, chloroplastic-like [Benincasa hispida]8.7e-6395.38Show/hide
Query:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
        VRGLQIKCVRVGGVEIPNNKR+QYSLQYIHGIGRNNAKKIL+DL++ENKITKDLSEEELISIRDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
Subjt:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG

Query:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR
        LPCRGQRTKNNCRTLKGKKVAI GKKKAPR
Subjt:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR

TrEMBL top hitse value%identityAlignment
A0A0A0KN28 Uncharacterized protein7.2e-6393.85Show/hide
Query:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
        VRGLQIKCVRVGGVEIPNNKR+QYSLQY+HGIGRNNAKKIL+DL++ENKITKDLSEEELISIRDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
Subjt:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG

Query:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR
        LPCRGQRTKNNCRTLKGKK+AI GKKKAPR
Subjt:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR

A0A1S3CPR4 30S ribosomal protein S13, chloroplastic1.6e-6294.62Show/hide
Query:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
        VRGLQIKCVRVGGVEIPNNKR+QYSLQYIHGIGRNNAKKIL+DL+LENKITKDLSEEEL S+RDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
Subjt:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG

Query:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR
        LPCRGQRTKNNCRTLKGKKVAI GKKKAPR
Subjt:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR

A0A5A7TVL6 30S ribosomal protein S131.6e-6294.62Show/hide
Query:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
        VRGLQIKCVRVGGVEIPNNKR+QYSLQYIHGIGRNNAKKIL+DL+LENKITKDLSEEEL S+RDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
Subjt:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG

Query:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR
        LPCRGQRTKNNCRTLKGKKVAI GKKKAPR
Subjt:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR

A0A6J1CJS2 30S ribosomal protein S13, chloroplastic-like1.2e-65100Show/hide
Query:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
        VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
Subjt:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG

Query:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR
        LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR
Subjt:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR

A0A6J1JXU5 30S ribosomal protein S13, chloroplastic-like3.9e-6193.08Show/hide
Query:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
        V GLQIKCVRVGGVEIPNNKR+ YSLQYIHGIGRNNAKKIL+DL++ENKITKDL+EEELISIRDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQG
Subjt:  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG

Query:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR
        LPCRGQRTKNNCRTLKGKKVAI GKKKAPR
Subjt:  LPCRGQRTKNNCRTLKGKKVAIPGKKKAPR

SwissProt top hitse value%identityAlignment
A0PXX2 30S ribosomal protein S133.6e-2755.46Show/hide
Query:  RVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLE-NKITKDLSEEELISIRDEVSK-FMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQR
        R+ G+++P  KR++  L YI+GIG N +++IL +  +  +   KDLSEEE+ +IRD + K F+IEGDLRR  AL I+RL EI CYRGIRH +GLP RGQ+
Subjt:  RVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLE-NKITKDLSEEELISIRDEVSK-FMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQR

Query:  TKNNCRTLKGKKVAIPGKK
        TK N RT KG K AI GKK
Subjt:  TKNNCRTLKGKKVAIPGKK

P42732 30S ribosomal protein S13, chloroplastic5.3e-5579.84Show/hide
Query:  RGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGL
        + L I+C RVGGVEIP NKRI+YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSK+MIEGDLRRFNALAI+RLKEIQCYRG+RHIQGL
Subjt:  RGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGL

Query:  PCRGQRTKNNCRTLKGKKVAIPGKKKAPR
        PCRGQRTKNNCRTLKGKK+AI GKKK  +
Subjt:  PCRGQRTKNNCRTLKGKKVAIPGKKKAPR

P82163 30S ribosomal protein S13, chloroplastic9.0e-5580.47Show/hide
Query:  GLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP
        GL IKCVRVG VEIPNNKR++YSLQYIHGIGR+ A++IL DL+LENK+TK+LSE+EL+ +RDEV+K+MIEGDLRRFNA+AIRRLKEIQCYRG+RHIQGLP
Subjt:  GLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP

Query:  CRGQRTKNNCRTLK-GKKVAIPGKKKAP
        CRGQRTKNNCRTLK GK+V I GKKK P
Subjt:  CRGQRTKNNCRTLK-GKKVAIPGKKKAP

Q8LPW2 Small ribosomal subunit protein S13, mitochondrial2.1e-2750Show/hide
Query:  VRGLQIKCVRVG---GVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRH
        V G++++ + +G   G EIP+NKR+ Y+LQ +HGIGR+ A+ I+ +L +ENK  KDLS+ EL SIR+ +SK++I  DL++     + RL  IQCYRGIRH
Subjt:  VRGLQIKCVRVG---GVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRH

Query:  IQGLPCRGQRTKNNCRTLKGKK
        +  LPCRGQRT  N RT + +K
Subjt:  IQGLPCRGQRTKNNCRTLKGKK

Q9CA19 Small ribosomal subunit protein S13, mitochondrial1.6e-3051.56Show/hide
Query:  GLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP
        GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L  L + NK+ +DL+ +ELI +R+EV +     +LRR     I+RL E+ CYRG RH  GLP
Subjt:  GLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP

Query:  CRGQRTKNNCRTLKGKKVAIPGKKKAPR
        CRGQRT  N RT KGK VAI GKKKAPR
Subjt:  CRGQRTKNNCRTLKGKKVAIPGKKKAPR

Arabidopsis top hitse value%identityAlignment
AT1G77750.1 Ribosomal protein S13/S18 family1.1e-3151.56Show/hide
Query:  GLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP
        GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L  L + NK+ +DL+ +ELI +R+EV +     +LRR     I+RL E+ CYRG RH  GLP
Subjt:  GLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP

Query:  CRGQRTKNNCRTLKGKKVAIPGKKKAPR
        CRGQRT  N RT KGK VAI GKKKAPR
Subjt:  CRGQRTKNNCRTLKGKKVAIPGKKKAPR

AT5G14320.1 Ribosomal protein S13/S18 family3.8e-5679.84Show/hide
Query:  RGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGL
        + L I+C RVGGVEIP NKRI+YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSK+MIEGDLRRFNALAI+RLKEIQCYRG+RHIQGL
Subjt:  RGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGL

Query:  PCRGQRTKNNCRTLKGKKVAIPGKKKAPR
        PCRGQRTKNNCRTLKGKK+AI GKKK  +
Subjt:  PCRGQRTKNNCRTLKGKKVAIPGKKKAPR

AT5G14320.2 Ribosomal protein S13/S18 family3.1e-2674.32Show/hide
Query:  RGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDL
        + L I+C RVGGVEIP NKRI+YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSK+MIEGDL
Subjt:  RGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTCGTGGTCTTCAAATCAAGTGTGTTCGAGTTGGAGGAGTTGAAATACCCAACAACAAGCGAATTCAATACTCCCTTCAATATATACATGGAATTGGTCGCAACAATGC
TAAGAAAATACTGTATGATCTAAGCCTGGAGAACAAGATAACCAAGGACTTATCTGAGGAGGAACTCATATCCATCAGAGATGAAGTTTCCAAGTTCATGATTGAAGGAG
ATCTGAGGCGGTTCAATGCACTCGCCATAAGGAGATTAAAAGAGATTCAGTGCTATAGAGGGATTCGACACATTCAGGGATTGCCTTGCAGAGGGCAGCGAACCAAAAAC
AACTGCAGGACCTTGAAGGGTAAGAAAGTTGCTATTCCAGGGAAGAAGAAGGCTCCTCGC
mRNA sequenceShow/hide mRNA sequence
GTTCGTGGTCTTCAAATCAAGTGTGTTCGAGTTGGAGGAGTTGAAATACCCAACAACAAGCGAATTCAATACTCCCTTCAATATATACATGGAATTGGTCGCAACAATGC
TAAGAAAATACTGTATGATCTAAGCCTGGAGAACAAGATAACCAAGGACTTATCTGAGGAGGAACTCATATCCATCAGAGATGAAGTTTCCAAGTTCATGATTGAAGGAG
ATCTGAGGCGGTTCAATGCACTCGCCATAAGGAGATTAAAAGAGATTCAGTGCTATAGAGGGATTCGACACATTCAGGGATTGCCTTGCAGAGGGCAGCGAACCAAAAAC
AACTGCAGGACCTTGAAGGGTAAGAAAGTTGCTATTCCAGGGAAGAAGAAGGCTCCTCGC
Protein sequenceShow/hide protein sequence
VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKN
NCRTLKGKKVAIPGKKKAPR