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MS015730 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015730
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type domain-containing protein
Genome locationscaffold983:658929..659702
RNA-Seq ExpressionMS015730
SyntenyMS015730
Gene Ontology termsGO:0044267 - cellular protein metabolic process (biological process)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2603827.1 nuclear ribonuclease Z-like [Pyrus ussuriensis x Pyrus communis]4.8e-1230.65Show/hide
Query:  DASAATLVPFYISFTITTVLRN------LDEAVDWVHGGTPESRIARTLRCTYDAVSRLKSNSSVVRGPSSERSCNCMVCLEDFDEDDGRLVSRLPCSHE
        +A+  T++P ++      +L +      +    DWV   + ++  AR +     ++  L+       G   ++  +C++C+EDF  +DG  VSRLPC H 
Subjt:  DASAATLVPFYISFTITTVLRN------LDEAVDWVHGGTPESRIARTLRCTYDAVSRLKSNSSVVRGPSSERSCNCMVCLEDFDEDDGRLVSRLPCSHE

Query:  YHFKCVSRWLRFDHRCPVCRFPMP
        YH  C+ +WL+  H CP+CR+PMP
Subjt:  YHFKCVSRWLRFDHRCPVCRFPMP

KAE8022191.1 hypothetical protein FH972_008015 [Carpinus fangiana]2.4e-1130Show/hide
Query:  VLATLDRLGVPATDPDPLARLLFSFLRRHADASAATLVPFYISFTITTVL----RNLDEAVDWVHGGTPESR---IARTLRCTYDAVSRLKSNSSVVRGP
        +L+ L  +G PA   + ++R + S     +     +  P  ++F  TT++     + DE+ D +  G  ES    +AR +  T  A+  L+    V    
Subjt:  VLATLDRLGVPATDPDPLARLLFSFLRRHADASAATLVPFYISFTITTVL----RNLDEAVDWVHGGTPESR---IARTLRCTYDAVSRLKSNSSVVRGP

Query:  SSERSCNCMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMPWVQTL
          +    C++C E+F  + G  ++RLPCSH YH  C+ +WL   HRCP+CR+P+P+V+ +
Subjt:  SSERSCNCMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMPWVQTL

KAF3959276.1 hypothetical protein CMV_015897 [Castanea mollissima]5.3e-1130.04Show/hide
Query:  YDCFVCTSAVPHWAGRHADKPNNGFLIRVQNFHVVDPLYMPPGNHMVLDSNFQLLHFPPAHFSSFSAVHRFVLATL-DRLGVPATDPDPLARLLFSF---
        Y C+   + VP+   R    P + FLIR+   HV+   Y  P  ++V  ++F      P   ++F AV   +LA +    GVP    D     + SF   
Subjt:  YDCFVCTSAVPHWAGRHADKPNNGFLIRVQNFHVVDPLYMPPGNHMVLDSNFQLLHFPPAHFSSFSAVHRFVLATL-DRLGVPATDPDPLARLLFSF---

Query:  LRRHADASAATLVPFYISFTITTVLRNLDEAVDWVHGGTPESRIARTLRCTYDAVSRLKSNSSVVRGPSSERSCNCMVCLEDFDEDDGRLVSRLPCSHEY
        +   A      L P  +   + T     D+ +D     + E+R  +T+     ++  LK     VR         C +CLE+F   DG  V  LPC H Y
Subjt:  LRRHADASAATLVPFYISFTITTVLRNLDEAVDWVHGGTPESRIARTLRCTYDAVSRLKSNSSVVRGPSSERSCNCMVCLEDFDEDDGRLVSRLPCSHEY

Query:  HFKCVSRWLRFDHRCPVCRFPMP
        H  C+ +WL   H CP+CRFPMP
Subjt:  HFKCVSRWLRFDHRCPVCRFPMP

PON90729.1 43kDa postsynaptic protein [Trema orientale]1.1e-1133.57Show/hide
Query:  GVPATDPDPLARLLFSF---LRRHADASAATLVPFYISFTITTVLRNLDEAVDWVHGGTPESRIARTLRCTYDAVSRLKSNSSVVRGPSSERSCNCMVCL
        G+P    + LA+ + S    L    D +AA L+P Y+  T+       D+A++  H        AR +R +   VS  KS+   +   + +  C CMVCL
Subjt:  GVPATDPDPLARLLFSF---LRRHADASAATLVPFYISFTITTVLRNLDEAVDWVHGGTPESRIARTLRCTYDAVSRLKSNSSVVRGPSSERSCNCMVCL

Query:  EDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMP
        +       +++ R+PCSH YH  C+ RWL  +H CPVCR+ MP
Subjt:  EDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMP

XP_024176460.1 uncharacterized protein LOC112182252 [Rosa chinensis]1.4e-1130.59Show/hide
Query:  RFVLATLDRLGVPATDPDPLARLLFSFLRRHADASAATLVPFYISFTI------TTVLRNLD--EAVDWV---------HGGTPESRIARTLRCTYDAVS
        +F+   L R+GVP   P+    +L  F++R+      T  P Y+ +T+       ++L + D  E VDWV         H GT + +     R    ++ 
Subjt:  RFVLATLDRLGVPATDPDPLARLLFSFLRRHADASAATLVPFYISFTI------TTVLRNLD--EAVDWV---------HGGTPESRIARTLRCTYDAVS

Query:  RLKSNSSVVRGPSSERSCNCMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMPWVQ
        ++K ++  V   S      C +CL+DF     +LV+ LPC H+YH  C+ + L   H CP+CR+PMP V+
Subjt:  RLKSNSSVVRGPSSERSCNCMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMPWVQ

TrEMBL top hitse value%identityAlignment
A0A2N9G5J1 RING-type domain-containing protein7.4e-1131.76Show/hide
Query:  LDRLGVPATDPDPLARLLFSFLRRHADASAATLVPFYISFTITTVLRNLDE--AVDWVHGGTPESRIARTLRCTYDAVSRLKSNSSVVRGPSSERSCNCM
        L  + VPA + +P+ + + S L R    + + L+P  +     TV +   +  A+D V   + E+  AR +  T  ++  L+   SV     S     C+
Subjt:  LDRLGVPATDPDPLARLLFSFLRRHADASAATLVPFYISFTITTVLRNLDE--AVDWVHGGTPESRIARTLRCTYDAVSRLKSNSSVVRGPSSERSCNCM

Query:  VCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMPWV
        +CL++F  + G  V+R+PCSH YH  C+ +WL   H CP+CR+ MP V
Subjt:  VCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMPWV

A0A2P5EYX1 43kDa postsynaptic protein5.1e-1233.57Show/hide
Query:  GVPATDPDPLARLLFSF---LRRHADASAATLVPFYISFTITTVLRNLDEAVDWVHGGTPESRIARTLRCTYDAVSRLKSNSSVVRGPSSERSCNCMVCL
        G+P    + LA+ + S    L    D +AA L+P Y+  T+       D+A++  H        AR +R +   VS  KS+   +   + +  C CMVCL
Subjt:  GVPATDPDPLARLLFSF---LRRHADASAATLVPFYISFTITTVLRNLDEAVDWVHGGTPESRIARTLRCTYDAVSRLKSNSSVVRGPSSERSCNCMVCL

Query:  EDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMP
        +       +++ R+PCSH YH  C+ RWL  +H CPVCR+ MP
Subjt:  EDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMP

A0A2P6SJ34 Putative transcription factor C2H2 family6.7e-1230.59Show/hide
Query:  RFVLATLDRLGVPATDPDPLARLLFSFLRRHADASAATLVPFYISFTI------TTVLRNLD--EAVDWV---------HGGTPESRIARTLRCTYDAVS
        +F+   L R+GVP   P+    +L  F++R+      T  P Y+ +T+       ++L + D  E VDWV         H GT + +     R    ++ 
Subjt:  RFVLATLDRLGVPATDPDPLARLLFSFLRRHADASAATLVPFYISFTI------TTVLRNLD--EAVDWV---------HGGTPESRIARTLRCTYDAVS

Query:  RLKSNSSVVRGPSSERSCNCMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMPWVQ
        ++K ++  V   S      C +CL+DF     +LV+ LPC H+YH  C+ + L   H CP+CR+PMP V+
Subjt:  RLKSNSSVVRGPSSERSCNCMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMPWVQ

A0A5N5FLS4 Nuclear ribonuclease Z-like2.3e-1230.65Show/hide
Query:  DASAATLVPFYISFTITTVLRN------LDEAVDWVHGGTPESRIARTLRCTYDAVSRLKSNSSVVRGPSSERSCNCMVCLEDFDEDDGRLVSRLPCSHE
        +A+  T++P ++      +L +      +    DWV   + ++  AR +     ++  L+       G   ++  +C++C+EDF  +DG  VSRLPC H 
Subjt:  DASAATLVPFYISFTITTVLRN------LDEAVDWVHGGTPESRIARTLRCTYDAVSRLKSNSSVVRGPSSERSCNCMVCLEDFDEDDGRLVSRLPCSHE

Query:  YHFKCVSRWLRFDHRCPVCRFPMP
        YH  C+ +WL+  H CP+CR+PMP
Subjt:  YHFKCVSRWLRFDHRCPVCRFPMP

A0A5N6R0F2 RING-type domain-containing protein1.1e-1130Show/hide
Query:  VLATLDRLGVPATDPDPLARLLFSFLRRHADASAATLVPFYISFTITTVL----RNLDEAVDWVHGGTPESR---IARTLRCTYDAVSRLKSNSSVVRGP
        +L+ L  +G PA   + ++R + S     +     +  P  ++F  TT++     + DE+ D +  G  ES    +AR +  T  A+  L+    V    
Subjt:  VLATLDRLGVPATDPDPLARLLFSFLRRHADASAATLVPFYISFTITTVL----RNLDEAVDWVHGGTPESR---IARTLRCTYDAVSRLKSNSSVVRGP

Query:  SSERSCNCMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMPWVQTL
          +    C++C E+F  + G  ++RLPCSH YH  C+ +WL   HRCP+CR+P+P+V+ +
Subjt:  SSERSCNCMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMPWVQTL

SwissProt top hitse value%identityAlignment
P0DPR2 E3 ubiquitin-protein ligase RNF437.4e-0851.11Show/hide
Query:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRF
        C +CLE+F   DG+ +  LPC HEYH  CV  WLR +H CP+C +
Subjt:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRF

Q641J8 E3 ubiquitin-protein ligase RNF12-A1.6e-0747.73Show/hide
Query:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCR
        C VC+ ++ E  G  + +LPCSHEYH  C+ RWL  +  CP+CR
Subjt:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCR

Q7T037 E3 ubiquitin-protein ligase RNF12-B1.6e-0747.73Show/hide
Query:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCR
        C VC+ ++ E  G  + +LPCSHEYH  C+ RWL  +  CP+CR
Subjt:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCR

Q9DBU5 E3 ubiquitin-protein ligase RNF61.3e-0737.5Show/hide
Query:  TYDAVSRLKSNSSVVRGPSSERSCNCMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPM
        T + +  L + S    G  SE    C VC+ D+    G  + +LPC HE+H  C+ RWL  +  CPVCR P+
Subjt:  TYDAVSRLKSNSSVVRGPSSERSCNCMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPM

Q9LQX2 E3 ubiquitin-protein ligase MPSR12.1e-0741.67Show/hide
Query:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMP
        C++CLE++  ++   V  +PC H +H  C+ +WL F   CPVCR+ MP
Subjt:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMP

Arabidopsis top hitse value%identityAlignment
AT1G18770.1 RING/U-box superfamily protein4.7e-1046.94Show/hide
Query:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMPW
        C++CLE+F E  GR V  LPC H++  +CV +W   +H CP+CRF +P+
Subjt:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMPW

AT1G18780.1 RING/U-box superfamily protein6.8e-0947.92Show/hide
Query:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMP
        C +CLE+F  DDGR +  LPC HE+  +CV  W    H CP+CR  +P
Subjt:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMP

AT1G21960.1 RING/U-box superfamily protein1.9e-1131.03Show/hide
Query:  ATLVPFYISFTITTVLRNLDEAVDWVHGGTPESRIA--RTLRCTYDAVSRLKSNSSVVRGPSSERSCNCMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSR
        ATLV  Y    +   + + DE  + +    P +++   R  R  Y+   +  S++SV           C +CLE+F++  G +V  LPC HE+   C+ +
Subjt:  ATLVPFYISFTITTVLRNLDEAVDWVHGGTPESRIA--RTLRCTYDAVSRLKSNSSVVRGPSSERSCNCMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSR

Query:  WLRFDHRCPVCRFPMP
        W   DH CP+CRF +P
Subjt:  WLRFDHRCPVCRFPMP

AT1G74620.1 RING/U-box superfamily protein4.7e-1043.75Show/hide
Query:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMP
        C +C+ED+ E    +V++LPC HE+H  C+++WL+ +H CP+CR  +P
Subjt:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMP

AT2G29840.1 RING/U-box superfamily protein4.7e-1047.92Show/hide
Query:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMP
        C +CLE+F  DDGR +  LPC HE+  +C  +W   +H CP+CRF +P
Subjt:  CMVCLEDFDEDDGRLVSRLPCSHEYHFKCVSRWLRFDHRCPVCRFPMP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACGCGGCCGTGCTCAGCTTGCGGAGCTGATACTTCCGGAGTCGGTGAGAGGCAGTTCCACAGAAGGCAACGGAAGCGGATGGTCCCTCACTTACGATTGCTTCGT
CTGCACTTCCGCCGTCCCCCATTGGGCAGGCCGCCACGCCGACAAGCCCAATAACGGCTTCCTCATTCGCGTCCAAAACTTCCACGTTGTGGACCCACTCTACATGCCAC
CTGGCAACCACATGGTCCTGGATTCCAACTTCCAACTCCTCCACTTCCCGCCGGCCCACTTCTCCTCCTTCTCCGCCGTCCACCGCTTCGTCCTCGCCACCCTCGACCGC
CTCGGCGTCCCCGCCACCGACCCCGACCCCCTCGCCCGCCTCCTCTTCTCCTTCCTCCGCCGCCACGCCGACGCCTCCGCCGCCACTCTCGTCCCCTTCTACATCTCCTT
CACCATCACCACCGTTCTTCGAAATCTGGACGAGGCCGTCGACTGGGTCCACGGAGGCACCCCCGAGTCTCGGATCGCGAGGACCCTGAGATGCACCTACGACGCCGTTT
CCAGGCTGAAGAGTAATTCCAGTGTGGTCCGTGGGCCGTCCTCCGAGAGAAGTTGTAATTGTATGGTGTGTCTGGAAGATTTTGACGAAGATGATGGGCGGCTGGTGAGC
CGGCTGCCGTGCTCCCATGAGTACCATTTTAAATGCGTTTCGCGTTGGCTGAGATTTGATCACCGCTGCCCCGTGTGCCGGTTTCCCATGCCCTGGGTTCAGACCCTGAT
GCCC
mRNA sequenceShow/hide mRNA sequence
ATGGAACGCGGCCGTGCTCAGCTTGCGGAGCTGATACTTCCGGAGTCGGTGAGAGGCAGTTCCACAGAAGGCAACGGAAGCGGATGGTCCCTCACTTACGATTGCTTCGT
CTGCACTTCCGCCGTCCCCCATTGGGCAGGCCGCCACGCCGACAAGCCCAATAACGGCTTCCTCATTCGCGTCCAAAACTTCCACGTTGTGGACCCACTCTACATGCCAC
CTGGCAACCACATGGTCCTGGATTCCAACTTCCAACTCCTCCACTTCCCGCCGGCCCACTTCTCCTCCTTCTCCGCCGTCCACCGCTTCGTCCTCGCCACCCTCGACCGC
CTCGGCGTCCCCGCCACCGACCCCGACCCCCTCGCCCGCCTCCTCTTCTCCTTCCTCCGCCGCCACGCCGACGCCTCCGCCGCCACTCTCGTCCCCTTCTACATCTCCTT
CACCATCACCACCGTTCTTCGAAATCTGGACGAGGCCGTCGACTGGGTCCACGGAGGCACCCCCGAGTCTCGGATCGCGAGGACCCTGAGATGCACCTACGACGCCGTTT
CCAGGCTGAAGAGTAATTCCAGTGTGGTCCGTGGGCCGTCCTCCGAGAGAAGTTGTAATTGTATGGTGTGTCTGGAAGATTTTGACGAAGATGATGGGCGGCTGGTGAGC
CGGCTGCCGTGCTCCCATGAGTACCATTTTAAATGCGTTTCGCGTTGGCTGAGATTTGATCACCGCTGCCCCGTGTGCCGGTTTCCCATGCCCTGGGTTCAGACCCTGAT
GCCC
Protein sequenceShow/hide protein sequence
MERGRAQLAELILPESVRGSSTEGNGSGWSLTYDCFVCTSAVPHWAGRHADKPNNGFLIRVQNFHVVDPLYMPPGNHMVLDSNFQLLHFPPAHFSSFSAVHRFVLATLDR
LGVPATDPDPLARLLFSFLRRHADASAATLVPFYISFTITTVLRNLDEAVDWVHGGTPESRIARTLRCTYDAVSRLKSNSSVVRGPSSERSCNCMVCLEDFDEDDGRLVS
RLPCSHEYHFKCVSRWLRFDHRCPVCRFPMPWVQTLMP