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MS015804 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015804
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontetraspanin-8
Genome locationscaffold943_2:68805..68962
RNA-Seq ExpressionMS015804
SyntenyMS015804
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587789.1 Tetraspanin-8, partial [Cucurbita argyrosperma subsp. sororia]1.6e-0761.54Show/hide
Query:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
        +SNWLQNRVN NK   + R+ L+DGKVCT FN KF RD+V+Q   EH SS Q
Subjt:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
XP_022933577.1 tetraspanin-8 [Cucurbita moschata]1.6e-0761.54Show/hide
Query:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
        +SNWLQNRVN NK   + R+ L+DGKVCT FN KF RD+V+Q   EH SS Q
Subjt:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
XP_023007578.1 tetraspanin-8 [Cucurbita maxima]4.5e-0759.62Show/hide
Query:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
        +SNWLQNRVN NK   + R+ L+DGKVCT FN KF RD+V++   EH SS Q
Subjt:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
XP_023531770.1 tetraspanin-8 [Cucurbita pepo subsp. pepo]1.6e-0761.54Show/hide
Query:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
        +SNWLQNRVN NK   + R+ L+DGKVCT FN KF RD+V+Q   EH SS Q
Subjt:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
XP_038880175.1 tetraspanin-8-like [Benincasa hispida]5.9e-0761.54Show/hide
Query:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
        +SNWLQNRV  NK   R R+ L+DGKVC+ FN K+ RD+VEQF  EH SS Q
Subjt:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
TrEMBL top hitse value%identityAlignment
A0A1S3B8W0 tetraspanin-8-like7.0e-0657.69Show/hide
Query:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
        +SNWLQNRV  NK   R R+ L+DGKVC  FN  F  ++VEQF  EH SS Q
Subjt:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
A0A5A7SV27 Tetraspanin-8-like7.0e-0657.69Show/hide
Query:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
        +SNWLQNRV  NK   R R+ L+DGKVC  FN  F  ++VEQF  EH SS Q
Subjt:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
A0A6J1BZZ8 tetraspanin-8-like1.1e-0661.54Show/hide
Query:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
        +SNWLQNRVN NK   R R+ L+DGKVCT F+ KF   +VEQF  EH SS Q
Subjt:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
A0A6J1F057 tetraspanin-87.5e-0861.54Show/hide
Query:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
        +SNWLQNRVN NK   + R+ L+DGKVCT FN KF RD+V+Q   EH SS Q
Subjt:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
A0A6J1L815 tetraspanin-82.2e-0759.62Show/hide
Query:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
        +SNWLQNRVN NK   + R+ L+DGKVCT FN KF RD+V++   EH SS Q
Subjt:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G28050.1 tetraspanin76.5e-0440.38Show/hide
Query:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ
        +SNWLQ RVN  K  ER R+ LM   VC+ + T++   +VE F   + ++ Q
Subjt:  FSNWLQNRVNKNKKLER-RAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCTCCAACTGGCTCCAGAATCGGGTCAATAAGAACAAAAAACTGGAACGGAGAGCTGGCTTAATGGACGGCAAGGTCTGCACCGGCTTCAACACTAAATTCGGCCGTGA
TTCCGTCGAGCAATTCTGCAACGAACACTCGTCTTCCACTCAG
mRNA sequenceShow/hide mRNA sequence
TTCTCCAACTGGCTCCAGAATCGGGTCAATAAGAACAAAAAACTGGAACGGAGAGCTGGCTTAATGGACGGCAAGGTCTGCACCGGCTTCAACACTAAATTCGGCCGTGA
TTCCGTCGAGCAATTCTGCAACGAACACTCGTCTTCCACTCAG
Protein sequenceShow/hide protein sequence
FSNWLQNRVNKNKKLERRAGLMDGKVCTGFNTKFGRDSVEQFCNEHSSSTQ