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MS015814 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015814
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger (C2H2 type) family protein
Genome locationscaffold943_2:133654..134789
RNA-Seq ExpressionMS015814
SyntenyMS015814
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR003604 - Matrin/U1-C-like, C2H2-type zinc finger
IPR013087 - Zinc finger C2H2-type
IPR022755 - Zinc finger, double-stranded RNA binding
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143276.1 zinc finger protein 593 [Cucumis sativus]6.8e-5486.89Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT
        MGGKCPHRSVKKRRYSHKTARRTKFLVK  D++Y     + KP+VERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKR+K M GPAPHT
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT

Query:  QLDAELAAGMGMPDNGPKLMSM
        QLDAELAAGMGMPDNGPKLM+M
Subjt:  QLDAELAAGMGMPDNGPKLMSM

XP_008462489.1 PREDICTED: zinc finger protein 593 [Cucumis melo]8.0e-5587.7Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT
        MGGKCPHRSVKKRRYSHKTARRTKFLVK  D++Y     + KP+VERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKR+KLM+GPAPHT
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT

Query:  QLDAELAAGMGMPDNGPKLMSM
        QLDAELAAGMGMPDNGPKLM+M
Subjt:  QLDAELAAGMGMPDNGPKLMSM

XP_022143723.1 zinc finger protein 593 [Momordica charantia]3.3e-5690.98Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT
        MGGKCPHRSVKKRRYSHKTARRTKFLVK  D++Y     + KPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT

Query:  QLDAELAAGMGMPDNGPKLMSM
        QLDAELAAGMGMPDNGPKLMSM
Subjt:  QLDAELAAGMGMPDNGPKLMSM

XP_022962632.1 zinc finger protein 593 [Cucurbita moschata]3.4e-5385.25Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT
        MGGKCPHRSVKKRRYSHKTARRTKFL+   D++Y     + KP+VERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKR+KLM GPAPHT
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT

Query:  QLDAELAAGMGMPDNGPKLMSM
        QLDA+LAAGMGMPDNGPKLM+M
Subjt:  QLDAELAAGMGMPDNGPKLMSM

XP_038882974.1 zinc finger protein 593 [Benincasa hispida]2.0e-5386.07Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT
        MGGKCPHRSVKKRRYSHKTARRTKFLVK  D++Y     + KP+VE+ SLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKR+KLM GPAPHT
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT

Query:  QLDAELAAGMGMPDNGPKLMSM
        QLDAELAAGMGMPDNGPKLM+M
Subjt:  QLDAELAAGMGMPDNGPKLMSM

TrEMBL top hitse value%identityAlignment
A0A0A0KHA1 C2H2-type domain-containing protein3.3e-5486.89Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT
        MGGKCPHRSVKKRRYSHKTARRTKFLVK  D++Y     + KP+VERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKR+K M GPAPHT
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT

Query:  QLDAELAAGMGMPDNGPKLMSM
        QLDAELAAGMGMPDNGPKLM+M
Subjt:  QLDAELAAGMGMPDNGPKLMSM

A0A1S3CH13 zinc finger protein 5933.9e-5587.7Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT
        MGGKCPHRSVKKRRYSHKTARRTKFLVK  D++Y     + KP+VERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKR+KLM+GPAPHT
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT

Query:  QLDAELAAGMGMPDNGPKLMSM
        QLDAELAAGMGMPDNGPKLM+M
Subjt:  QLDAELAAGMGMPDNGPKLMSM

A0A6J1CRE9 zinc finger protein 5931.6e-5690.98Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT
        MGGKCPHRSVKKRRYSHKTARRTKFLVK  D++Y     + KPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT

Query:  QLDAELAAGMGMPDNGPKLMSM
        QLDAELAAGMGMPDNGPKLMSM
Subjt:  QLDAELAAGMGMPDNGPKLMSM

A0A6J1HD68 zinc finger protein 5931.6e-5385.25Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT
        MGGKCPHRSVKKRRYSHKTARRTKFL+   D++Y     + KP+VERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKR+KLM GPAPHT
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT

Query:  QLDAELAAGMGMPDNGPKLMSM
        QLDA+LAAGMGMPDNGPKLM+M
Subjt:  QLDAELAAGMGMPDNGPKLMSM

A0A6J1I5Q7 zinc finger protein 5934.7e-5384.43Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT
        MGGKCPHRSVKKRRYSHK+ARRTKFL+   D++Y     + KP+VERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKR+KLM GPAPHT
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHT

Query:  QLDAELAAGMGMPDNGPKLMSM
        QLDA+LAAGMGMPDNGPKLM+M
Subjt:  QLDAELAAGMGMPDNGPKLMSM

SwissProt top hitse value%identityAlignment
B0BLT0 Zinc finger protein 5931.2e-1344.86Show/hide
Query:  HRSVKKRRYSH--KTARRTKFLVKDILYGHFSLMGKPDVERPSL--PVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQLDA
        H+S KK+  S   KT RR    VKD+   H  +  KP+  +  L   +D  LPG  Q+YCLHC RYF ++    EHFKTK H++R+K +    P+TQ +A
Subjt:  HRSVKKRRYSH--KTARRTKFLVKDILYGHFSLMGKPDVERPSL--PVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQLDA

Query:  ELAAGMG
        E AAGMG
Subjt:  ELAAGMG

Q08004 Bud site selection protein 203.7e-1038.61Show/hide
Query:  RYS---HKTARRTKFLVKDILYGHFSLMGKPDVER-PSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQLDAELAAGMG
        RYS   +KT RRT+ L  D++Y   S   K  V++  + P+DE  PG+GQ+YC+HC +Y         H K K H++R+K + G  P+TQ  ++ AAG  
Subjt:  RYS---HKTARRTKFLVKDILYGHFSLMGKPDVER-PSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQLDAELAAGMG

Query:  M
        +
Subjt:  M

Q553S1 Zinc finger protein 593 homolog3.4e-0831.62Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVKDILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQL
        MG    H     ++  +K AR TK   KDI      +  +   +     VD DLPGMGQ YC+HC ++F        H K K H+ R+K +    P++  
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVKDILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQL

Query:  DAELAAGMGMPDNGPKL
        ++++       DNG KL
Subjt:  DAELAAGMGMPDNGPKL

Q9P370 Zinc finger protein bud201.1e-0934.91Show/hide
Query:  VKKRRYSHKTAR----RTKFLVKDILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQLDAELA
        V ++R  H        RT+   +D+   H  L      ++  LP+D DLPG+GQ+YC+ C RYF +      H K K H++R+K +    P+TQ +AE A
Subjt:  VKKRRYSHKTAR----RTKFLVKDILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQLDAELA

Query:  AGMGMP
          +G P
Subjt:  AGMGMP

Q9U239 Zinc finger protein 593 homolog2.8e-1035.58Show/hide
Query:  PHRSVKKRRYSHKTARRTKFLVKDILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQLDAELA
        P    +K   S+KT +R     KD+   H  L  +   +     +D DLPG GQ+YC+ C+R+F +   R  H KTK H+ R+K +    P+TQ +A  A
Subjt:  PHRSVKKRRYSHKTARRTKFLVKDILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQLDAELA

Query:  AGMG
         G G
Subjt:  AGMG

Arabidopsis top hitse value%identityAlignment
AT2G36930.1 zinc finger (C2H2 type) family protein2.6e-4368.91Show/hide
Query:  GKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQL
        G+CP R VKKRR SHKTARR KF VK  D++Y   + + KP+ E   L +DEDLPGMGQ+YCLHCDRYF+NVSVRD+HFKTK+H+KR+ +M G APH+QL
Subjt:  GKCPHRSVKKRRYSHKTARRTKFLVK--DILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQL

Query:  DAELAAGMGMPDNGPKLMS
        DA+LA GMGMPDNGPKLMS
Subjt:  DAELAAGMGMPDNGPKLMS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGAAAGTGCCCTCACAGAAGCGTCAAGAAGCGGAGGTACTCCCATAAGACCGCTCGGCGCACGAAATTCCTCGTCAAAGATATCCTTTATGGTCACTTTAGTTT
AATGGGTAAACCCGATGTGGAGAGGCCTTCTCTGCCTGTCGATGAAGATTTGCCTGGAATGGGGCAGTACTACTGCTTGCACTGCGACCGATACTTTGCGAATGTGTCTG
TGAGGGACGAGCATTTCAAGACCAAGCGTCACAGGAAGCGTATGAAACTAATGACGGGTCCTGCACCCCACACACAGTTGGACGCCGAGTTAGCTGCTGGGATGGGCATG
CCCGATAACGGTCCGAAGCTTATGTCAATG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGAAAGTGCCCTCACAGAAGCGTCAAGAAGCGGAGGTACTCCCATAAGACCGCTCGGCGCACGAAATTCCTCGTCAAAGATATCCTTTATGGTCACTTTAGTTT
AATGGGTAAACCCGATGTGGAGAGGCCTTCTCTGCCTGTCGATGAAGATTTGCCTGGAATGGGGCAGTACTACTGCTTGCACTGCGACCGATACTTTGCGAATGTGTCTG
TGAGGGACGAGCATTTCAAGACCAAGCGTCACAGGAAGCGTATGAAACTAATGACGGGTCCTGCACCCCACACACAGTTGGACGCCGAGTTAGCTGCTGGGATGGGCATG
CCCGATAACGGTCCGAAGCTTATGTCAATG
Protein sequenceShow/hide protein sequence
MGGKCPHRSVKKRRYSHKTARRTKFLVKDILYGHFSLMGKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQLDAELAAGMGM
PDNGPKLMSM