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MS015853 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015853
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-binding protein S1FA-like
Genome locationscaffold943_2:450618..450842
RNA-Seq ExpressionMS015853
SyntenyMS015853
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006779 - DNA binding protein S1FA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW38763.1 DNA-binding protein S1FA2 [Vitis vinifera]1.6e-2486.11Show/hide
Query:  QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        QG VI+DADA GFNPGL+VLL+V GLLL FLVGNYALYVYAQKTLPP+KKKPVSKKKMK+ERLKQG+SAPGE
Subjt:  QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_004143239.1 DNA-binding protein S1FA [Cucumis sativus]4.1e-2588.73Show/hide
Query:  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G VIRD +A GFNPGL+VLLVVGGLL AFLVGNYALY+YAQKTLPPKKKKPVSKKKMKRERLKQG+SAPGE
Subjt:  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_022143745.1 DNA-binding protein S1FA-like [Momordica charantia]1.4e-28100Show/hide
Query:  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
Subjt:  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_022962636.1 DNA-binding protein S1FA-like [Cucurbita moschata]1.1e-2591.55Show/hide
Query:  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G VIR+ADA GFNPGL+VLLVVGGLLLAFL GNYALYVYAQKTLPPK+KKPVSKKKMKRERLKQGISAPGE
Subjt:  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_038881351.1 DNA-binding protein S1FA-like [Benincasa hispida]3.7e-2692.96Show/hide
Query:  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G VIRDADA GFNPGL+VLLVVGGLLLAFL GNYALY+YAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
Subjt:  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

TrEMBL top hitse value%identityAlignment
A0A0A0KEM3 DNA-binding protein S1FA2.0e-2588.73Show/hide
Query:  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G VIRD +A GFNPGL+VLLVVGGLL AFLVGNYALY+YAQKTLPPKKKKPVSKKKMKRERLKQG+SAPGE
Subjt:  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A0A438IKX7 DNA-binding protein S1FA27.6e-2586.11Show/hide
Query:  QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        QG VI+DADA GFNPGL+VLL+V GLLL FLVGNYALYVYAQKTLPP+KKKPVSKKKMK+ERLKQG+SAPGE
Subjt:  QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A0A6J1CPM9 DNA-binding protein S1FA-like6.7e-29100Show/hide
Query:  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
Subjt:  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A0A6J1HDT2 DNA-binding protein S1FA-like5.3e-2691.55Show/hide
Query:  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G VIR+ADA GFNPGL+VLLVVGGLLLAFL GNYALYVYAQKTLPPK+KKPVSKKKMKRERLKQGISAPGE
Subjt:  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A5BKG4 Uncharacterized protein7.6e-2586.11Show/hide
Query:  QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        QG VI+DADA GFNPGL+VLL+V GLLL FLVGNYALYVYAQKTLPP+KKKPVSKKKMK+ERLKQG+SAPGE
Subjt:  QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

SwissProt top hitse value%identityAlignment
P42551 DNA-binding protein S1FA13.2e-2075.38Show/hide
Query:  ADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        A+A G NPGL+VLLVVGG LL FL+ NY LYVYAQK LPP+KKKPVSKKK+KRE+LKQG+  PGE
Subjt:  ADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

P42552 DNA-binding protein S1FA4.5e-2273.53Show/hide
Query:  IRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        + + +A G NPGL+VLLV+GGLLL FLVGN+ LY YAQK LPPKKKKP+SKKKMKRERLKQG++ PGE
Subjt:  IRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

Q42337 DNA-binding protein S1FA25.4e-2063.51Show/hide
Query:  GAQGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G+ GK +   +A G NPGL+VLLV+GGLL+ FL+ NY +Y+YAQK LPP+KKKP+SKKK+KRE+LKQG+  PGE
Subjt:  GAQGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

Q7XLX6 DNA-binding protein S1FA23.2e-2080.33Show/hide
Query:  GFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G NPG++VL+VV   LL F VGNYALYVYAQKTLPP+KKKPVSKKKMKRE+LKQG+SAPGE
Subjt:  GFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

Q93VI0 DNA-binding protein S1FA39.3e-2071.88Show/hide
Query:  DAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        ++ G NPGL+VLLV+GGLLL FLVGN+ LY YAQK LPP+KKKPVSKKKMK+E++KQG+  PGE
Subjt:  DAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

Arabidopsis top hitse value%identityAlignment
AT2G37120.1 S1FA-like DNA-binding protein3.9e-2163.51Show/hide
Query:  GAQGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G+ GK +   +A G NPGL+VLLV+GGLL+ FL+ NY +Y+YAQK LPP+KKKP+SKKK+KRE+LKQG+  PGE
Subjt:  GAQGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

AT3G09735.1 S1FA-like DNA-binding protein6.6e-2171.88Show/hide
Query:  DAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        ++ G NPGL+VLLV+GGLLL FLVGN+ LY YAQK LPP+KKKPVSKKKMK+E++KQG+  PGE
Subjt:  DAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

AT3G53370.1 S1FA-like DNA-binding protein2.3e-2175.38Show/hide
Query:  ADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        A+A G NPGL+VLLVVGG LL FL+ NY LYVYAQK LPP+KKKPVSKKK+KRE+LKQG+  PGE
Subjt:  ADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

AT3G53370.2 S1FA-like DNA-binding protein3.2e-0772.73Show/hide
Query:  YAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        +A K LPP+KKKPVSKKK+KRE+LKQG+  PGE
Subjt:  YAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTGGTGCACAGGGGAAGGTGATTAGAGATGCAGACGCTGGAGGATTCAATCCAGGACTTGTCGTGCTGCTCGTCGTCGGGGGGCTGCTCTTGGCTTTTCTCGTAGGGAA
TTACGCACTGTATGTTTATGCGCAGAAGACCCTCCCTCCCAAAAAGAAGAAACCAGTTTCCAAGAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTATCTCTGCACCTG
GAGAG
mRNA sequenceShow/hide mRNA sequence
CTTGGTGCACAGGGGAAGGTGATTAGAGATGCAGACGCTGGAGGATTCAATCCAGGACTTGTCGTGCTGCTCGTCGTCGGGGGGCTGCTCTTGGCTTTTCTCGTAGGGAA
TTACGCACTGTATGTTTATGCGCAGAAGACCCTCCCTCCCAAAAAGAAGAAACCAGTTTCCAAGAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTATCTCTGCACCTG
GAGAG
Protein sequenceShow/hide protein sequence
LGAQGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE