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MS015863 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015863
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S ribosomal protein L4-like
Genome locationscaffold943_2:513326..513523
RNA-Seq ExpressionMS015863
SyntenyMS015863
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR023574 - Ribosomal protein L4 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580580.1 60S ribosomal protein L4-1, partial [Cucurbita argyrosperma subsp. sororia]3.8e-1482.46Show/hide
Query:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L+ + SL  DMATDAAPTVPL DVMKASIR DIVNFVHANISKN RQPYAVSKRA H
Subjt:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

XP_022944562.1 60S ribosomal protein L4-like [Cucurbita moschata]3.8e-1482.46Show/hide
Query:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L+ + SL  DMATDAAPTVPL DVMKASIR DIVNFVHANISKN RQPYAVSKRA H
Subjt:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

XP_022983290.1 60S ribosomal protein L4-like [Cucurbita maxima]3.8e-1482.46Show/hide
Query:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L+ + SL  DMATDAAPTVPL DVMKASIR DIVNFVHANISKN RQPYAVSKRA H
Subjt:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

XP_023005914.1 60S ribosomal protein L4-like [Cucurbita maxima]3.8e-1482.46Show/hide
Query:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L+ + SL  DMATDAAPTVPL DVMKASIR DIVNFVHANISKN RQPYAVSKRA H
Subjt:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

XP_023539772.1 60S ribosomal protein L4-like [Cucurbita pepo subsp. pepo]3.8e-1482.46Show/hide
Query:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L+ + SL  DMATDAAPTVPL DVMKASIR DIVNFVHANISKN RQPYAVSKRA H
Subjt:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

TrEMBL top hitse value%identityAlignment
A0A0A0L0Q4 Ribos_L4_asso_C domain-containing protein4.1e-1480.7Show/hide
Query:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L+ + SL  DMATDAAPTVPL DVMKASIR DIV+FVH+NISKNSRQPYAVSKRA H
Subjt:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

A0A5A7TZA0 60S ribosomal protein L4-like4.1e-1480.7Show/hide
Query:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L+ + SL  DMATDAAPTVPL DVMKASIR DIV+FVH+NISKNSRQPYAVSKRA H
Subjt:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

A0A6J1FVZ1 60S ribosomal protein L4-like1.8e-1482.46Show/hide
Query:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L+ + SL  DMATDAAPTVPL DVMKASIR DIVNFVHANISKN RQPYAVSKRA H
Subjt:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

A0A6J1J5G3 60S ribosomal protein L4-like1.8e-1482.46Show/hide
Query:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L+ + SL  DMATDAAPTVPL DVMKASIR DIVNFVHANISKN RQPYAVSKRA H
Subjt:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

A0A6J1L0N2 60S ribosomal protein L4-like1.8e-1482.46Show/hide
Query:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L+ + SL  DMATDAAPTVPL DVMKASIR DIVNFVHANISKN RQPYAVSKRA H
Subjt:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

SwissProt top hitse value%identityAlignment
P02385 60S ribosomal protein L4-B3.6e-0751.85Show/hide
Query:  LFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L S+  +    +   V +  V KA IR DIVNFVH N+ KN+RQPYAVSK A H
Subjt:  LFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

P49691 60S ribosomal protein L4-21.4e-1170.83Show/hide
Query:  DMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        DM+TD + TV L DVM A +R DIVNFVHA IS NSRQPYAVSK+A H
Subjt:  DMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

Q58DW0 60S ribosomal protein L44.6e-0751.85Show/hide
Query:  LFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L S+  +    +   V L  V KA IR DIVNFVH N+ KN+RQPYAVS+ A H
Subjt:  LFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

Q9SF40 60S ribosomal protein L4-15.3e-1163.16Show/hide
Query:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L+ + +L  DM+TD + TV L DVM A +R DIVNFVHA IS NSRQPYAVSK+A H
Subjt:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

Q9XF97 60S ribosomal protein L42.5e-1371.93Show/hide
Query:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L+ + SL  DMATD   TV L DVMKASIR DIV FVH+NISKNSRQPYAVSK+A H
Subjt:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

Arabidopsis top hitse value%identityAlignment
AT3G09630.1 Ribosomal protein L4/L1 family3.8e-1263.16Show/hide
Query:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L+ + +L  DM+TD + TV L DVM A +R DIVNFVHA IS NSRQPYAVSK+A H
Subjt:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

AT3G09630.2 Ribosomal protein L4/L1 family3.8e-1263.16Show/hide
Query:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        L+ + +L  DM+TD + TV L DVM A +R DIVNFVHA IS NSRQPYAVSK+A H
Subjt:  LLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

AT5G02870.1 Ribosomal protein L4/L1 family9.9e-1370.83Show/hide
Query:  DMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        DM+TD + TV L DVM A +R DIVNFVHA IS NSRQPYAVSK+A H
Subjt:  DMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH

AT5G02870.2 Ribosomal protein L4/L1 family9.9e-1370.83Show/hide
Query:  DMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH
        DM+TD + TV L DVM A +R DIVNFVHA IS NSRQPYAVSK+A H
Subjt:  DMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCCAATGGCAGTCACTGCTGACCACTCTCTTGTTTCTGTTCAGTCTATTGAAGGACATGGCCACTGATGCAGCGCCAACTGTCCCATTATCGGACGTGATGAAAGCTTC
AATTCGATCAGACATTGTCAACTTTGTCCATGCCAATATCTCCAAGAACAGTCGCCAACCCTATGCCGTGAGCAAGCGCGCCGACCAC
mRNA sequenceShow/hide mRNA sequence
TTCCAATGGCAGTCACTGCTGACCACTCTCTTGTTTCTGTTCAGTCTATTGAAGGACATGGCCACTGATGCAGCGCCAACTGTCCCATTATCGGACGTGATGAAAGCTTC
AATTCGATCAGACATTGTCAACTTTGTCCATGCCAATATCTCCAAGAACAGTCGCCAACCCTATGCCGTGAGCAAGCGCGCCGACCAC
Protein sequenceShow/hide protein sequence
FQWQSLLTTLLFLFSLLKDMATDAAPTVPLSDVMKASIRSDIVNFVHANISKNSRQPYAVSKRADH