CuGenDBv2

Gene ID	MS015864
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Genome location	scaffold943_2:515443..516666
RNA-Seq Expression	MS015864
Synteny	MS015864
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0070847 - core mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019258 - Mediator complex, subunit Med4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008449288.1 PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo]

9.6e-201

92.65

Show/hide

Query:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV
         SQTQSSPST LD+TPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVKT+   
Subjt:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV

Query:  ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA
        EN+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEPPAPV  DANPL+
Subjt:  ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD
        N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSD
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

XP_022143910.1 mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]

8.4e-221

100

Show/hide

Query:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV
        NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV
Subjt:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV

Query:  ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA
        ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA
Subjt:  ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD
        NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

XP_022963248.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita moschata]

4.5e-198

92.42

Show/hide

Query:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQN  NLSSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV
        NSQTQS+PSTPLD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDVLFDDYADY+  +RVKT DDV
Subjt:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV

Query:  ENDSLCS-TTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPL
        EN+SLCS TTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLY FADLDVGLPK+VESTEKTIEPMIE PAPVPTDANPL
Subjt:  ENDSLCS-TTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPL

Query:  ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTS
        A LA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDEP QLR NALPGLH+P EPIQVR VQLDILDQDDDSSDY S
Subjt:  ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTS

Query:  DEGSSEDDD
        +EGSSEDDD
Subjt:  DEGSSEDDD

XP_023518528.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo]

1.1e-199

92.91

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Query:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV
        NSQTQS+PSTPLD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDVLFDDYADY+  +RVKT DDV
Subjt:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV

Query:  ENDSLC-STTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPL
        EN+SLC STTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLY+FADLDVGLPK+VESTEKTIEPMIEPPAPVPTDANPL
Subjt:  ENDSLC-STTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPL

Query:  ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTS
        A LA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDEP QLR NALPGLH+P EPIQVR VQLDILDQDDDSSDY S
Subjt:  ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTS

Query:  DEGSSEDDD
        +EGSSEDDD
Subjt:  DEGSSEDDD

XP_038882754.1 mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]

4.5e-206

94.12

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Query:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV
         SQTQSSPST LD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVK KDD 
Subjt:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV

Query:  ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA
        EN+SLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LD+GLPKAVESTEKTIEPMIEPPAPVPTDANPL+
Subjt:  ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD
        N+A+IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEP QLRPNA PGLHKPPEPIQVR VQLDILDQDDDSSDYTSD
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXB7 Mediator of RNA polymerase II transcription subunit 4

2.8e-198

92.4

Show/hide

Query:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ NLSS TPSSTLLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV
         SQTQSSPST LD+TPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLK+AEQVLDVLFDDYADY+RP+R KT+ D 
Subjt:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV

Query:  ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA
        EN+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEPPAPV  DANP  
Subjt:  ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD
         LAAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSD
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

A0A1S3BLP6 Mediator of RNA polymerase II transcription subunit 4

4.7e-201

92.65

Show/hide

Query:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV
         SQTQSSPST LD+TPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVKT+   
Subjt:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV

Query:  ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA
        EN+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEPPAPV  DANPL+
Subjt:  ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD
        N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSD
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

A0A5A7TZC1 Mediator of RNA polymerase II transcription subunit 4

4.7e-201

92.65

Show/hide

Query:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV
         SQTQSSPST LD+TPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVKT+   
Subjt:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV

Query:  ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA
        EN+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEPPAPV  DANPL+
Subjt:  ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD
        N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSD
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

A0A6J1CQ51 Mediator of RNA polymerase II transcription subunit 4

4.0e-221

100

Show/hide

Query:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV
        NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV
Subjt:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV

Query:  ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA
        ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA
Subjt:  ENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD
        NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

A0A6J1HH73 Mediator of RNA polymerase II transcription subunit 4

2.2e-198

92.42

Show/hide

Query:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQN  NLSSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV
        NSQTQS+PSTPLD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDVLFDDYADY+  +RVKT DDV
Subjt:  NSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDV

Query:  ENDSLCS-TTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPL
        EN+SLCS TTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLY FADLDVGLPK+VESTEKTIEPMIE PAPVPTDANPL
Subjt:  ENDSLCS-TTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPL

Query:  ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTS
        A LA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDEP QLR NALPGLH+P EPIQVR VQLDILDQDDDSSDY S
Subjt:  ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTS

Query:  DEGSSEDDD
        +EGSSEDDD
Subjt:  DEGSSEDDD

SwissProt top hits

e value

%identity

Alignment

Q54D00 Putative mediator of RNA polymerase II transcription subunit 4

1.9e-05

27.27

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Query:  LNSQTQSSPSTPLD-----ATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLD---------------
        LNSQ       P+D     ATP+   ++++    +       + +L++   +Q    +I  EI  KD  +   A  LKD E  L+               
Subjt:  LNSQTQSSPSTPLD-----ATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLD---------------

Query:  ---VLFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQEEQMRASQL-----------YN
           ++ +   D ++P    + D++ N          ++   D++SYAH+IS TT AP  FG    APL     PPAPQ+E MR+S L           Y 
Subjt:  ---VLFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQEEQMRASQL-----------YN

Query:  FADLDVGLP
         A++DV  P
Subjt:  FADLDVGLP

Q9LZ00 Mediator of RNA polymerase II transcription subunit 4

1.5e-140

65.9

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Query:  MLQHQIAQSPARLGLNNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMATLASKL
        MLQHQI QSPARLGL  P SPS+QNPTP     P    S QS H   Q QPNL              S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIAQSPARLGLNNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMATLASKL

Query:  FEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI++KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYRRPQRVK-TKDDVEND---SLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKA
        D+L DDY+DYR+P+R K  +DD +ND   S  STTV+SQLKL DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FADLD+GLPK 
Subjt:  DVLFDDYADYRRPQRVK-TKDDVEND---SLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKA

Query:  VESTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKP
        VE+ EK +E +IEPP P         +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LPPL+S+  PR ++ Q +RP+   GLH+P
Subjt:  VESTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKP

Query:  PEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD
        P+ IQVR VQLDIL +DDDSSDY+SD+ SS+D+D
Subjt:  PEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD

Arabidopsis top hits

e value

%identity

Alignment

AT5G02850.1 hydroxyproline-rich glycoprotein family protein

1.1e-141

65.9

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Query:  MLQHQIAQSPARLGLNNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMATLASKL
        MLQHQI QSPARLGL  P SPS+QNPTP     P    S QS H   Q QPNL              S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIAQSPARLGLNNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMATLASKL

Query:  FEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI++KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYRRPQRVK-TKDDVEND---SLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKA
        D+L DDY+DYR+P+R K  +DD +ND   S  STTV+SQLKL DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FADLD+GLPK 
Subjt:  DVLFDDYADYRRPQRVK-TKDDVEND---SLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKA

Query:  VESTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKP
        VE+ EK +E +IEPP P         +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LPPL+S+  PR ++ Q +RP+   GLH+P
Subjt:  VESTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKP

Query:  PEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD
        P+ IQVR VQLDIL +DDDSSDY+SD+ SS+D+D
Subjt:  PEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTTCAGCACCAAATTGCGCAGTCCCCTGCTAGGTTGGGCTTGAACAATCCCAATTCTCCCTCAATTCAAAACCCTACCCCTCCCAAATTGCCTCCTTCTCAACAATC
CCACCACCAAAATCAACCCAATCTCTCTTCTCCAACTCCTTCATCGACCCTTCTCCCTCTCCTTCCTCCGCTCCCCAGAGCTCAAGCTCTTCTCCTGCAAATGGCTACCC
TCGCCTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCGTTCCGGGGTTCTCTCCCAACTTTTCTTAATTCCCAAACGCAGTCGTCGCCCTCTACG
CCTCTTGATGCTACTCCATCTACTTCGAAAGAAATTCTGTCCCTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAGCTTCAGGAGATTCTTGATCTTCA
GGACTCTAAGCAGAAGATTGCCTATGAGATTCGGGCCAAGGATGCTGCTCTTCGTGCTTTTGCTAATAAACTCAAGGATGCTGAGCAGGTTCTTGATGTTCTGTTTGATG
ATTATGCGGATTATCGACGTCCTCAACGGGTTAAGACAAAGGATGATGTTGAAAATGATTCTTTGTGTTCGACTACGGTTGCATCCCAGTTGAAATTATCTGATATATTG
TCGTATGCCCATCGAATTAGCTATACGACTTTCGCGCCACCTGAATTCGGCGCTGGACAAGCTCCGCTACGTGGAGCTCTTCCTCCCGCCCCGCAAGAAGAGCAAATGCG
AGCCTCCCAGTTGTATAACTTTGCAGACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACGATTGAGCCAATGATTGAGCCTCCAGCTCCAGTGCCAA
CGGATGCTAATCCTCTTGCTAATCTGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATCACTGTACCATCTGGTTGGAAACCTGGAATGCCAGTGGAATTGCCCAGAGAT
TTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCATTGGATTCTCTTCCTGTTCCTAGAGTTGATGAGCCACAACAATTGAGGCCTAATGC
TCTTCCAGGATTGCACAAACCTCCTGAGCCGATACAAGTTAGGCCTGTACAGTTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACACTAGTGATGAAGGAAGCT
CTGAAGATGATGAT

mRNA sequence

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Protein sequence

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MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPST
PLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDIL
SYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRD
LPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD

MS015864 (gene) of Bitter gourd (TR) v1 genome