; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015899 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015899
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGlycine rich RNA binding protein
Genome locationscaffold943_2:747042..748592
RNA-Seq ExpressionMS015899
SyntenyMS015899
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008447620.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]2.3e-6487.59Show/hide
Query:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM
        MAF S+VRRVL+GSS SS+SSIL+SQW  +RLSSTLTSPKLFISGLSRLTTDEKL+EAFSSFGQLV+AKV+TDRATGRSKGF FVTY+TIE+AE+AR+ M
Subjt:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

XP_022143719.1 organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]3.0e-7299.31Show/hide
Query:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM
        MAFLSSVRRVLNGSSSS+ASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM
Subjt:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

XP_022972736.1 organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima]2.3e-6489.19Show/hide
Query:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM
        MAF S+VRRVLNGSSSS  SS+L+SQWT+ RLSSTLTSPKLFISGLSRLTTDEKLQEAF+SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGM
Subjt:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQPQ---SETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPRPPP PQ   +ETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQPQ---SETSEFGIRTNKTIGWCG

XP_023517167.1 organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. pepo]3.0e-6491.16Show/hide
Query:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM
        MAF S+VRRVLNGSSSS  SS+L+SQWT+ RLSSTLTSPKLFISGLSRLTTDEKLQEAF+SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGM
Subjt:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM

Query:  NAKFLDGWVIFVDPAKPREPR-PPPQPQS-ETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPR PPPQPQS ETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPR-PPPQPQS-ETSEFGIRTNKTIGWCG

XP_031739912.1 organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus]1.8e-6489.04Show/hide
Query:  MAFLSSVRRVLNG-SSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREG
        MAF S+VRRVLNG SSSSS+SSIL+SQW  +RLSSTLTSPKLFISGLSRLTTDEKL+EAFSSFGQLV+AKV+TDRATGRSKGF FVTY+TI++AEKARE 
Subjt:  MAFLSSVRRVLNG-SSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREG

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
        MNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

TrEMBL top hitse value%identityAlignment
A0A1S3BHV3 glycine-rich RNA-binding protein 4, mitochondrial1.1e-6487.59Show/hide
Query:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM
        MAF S+VRRVL+GSS SS+SSIL+SQW  +RLSSTLTSPKLFISGLSRLTTDEKL+EAFSSFGQLV+AKV+TDRATGRSKGF FVTY+TIE+AE+AR+ M
Subjt:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

A0A6J1CQ59 organelle RRM domain-containing protein 2, mitochondrial1.5e-7299.31Show/hide
Query:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM
        MAFLSSVRRVLNGSSSS+ASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM
Subjt:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

A0A6J1HDN1 organelle RRM domain-containing protein 2, mitochondrial2.5e-6491.16Show/hide
Query:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM
        MAF S+VRRVLNGSSSS  SS+L+SQWT  RLSSTLTSPKLFISGLSRLTTDEKLQEAF+SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGM
Subjt:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM

Query:  NAKFLDGWVIFVDPAKPREPR-PPPQPQS-ETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPR PPPQPQS ETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPR-PPPQPQS-ETSEFGIRTNKTIGWCG

A0A6J1I6S8 organelle RRM domain-containing protein 2, mitochondrial1.1e-6489.19Show/hide
Query:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM
        MAF S+VRRVLNGSSSS  SS+L+SQWT+ RLSSTLTSPKLFISGLSRLTTDEKLQEAF+SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGM
Subjt:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQPQ---SETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPRPPP PQ   +ETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQPQ---SETSEFGIRTNKTIGWCG

A0A7N2LNA5 RRM domain-containing protein1.8e-5982.07Show/hide
Query:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM
        MAF+S +RRVL G  SS+ASSIL+S +T++R ++TLTSPKLFISGLSRLTTD+KLQEAFS FGQLV+AKVITDRATGRSKGFGFV+YATIE+AEKAREGM
Subjt:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPRPPPQPQ E SE G RTN+T+GWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

SwissProt top hitse value%identityAlignment
Q6YWP9 Organelle RRM domain-containing protein 1, chloroplastic4.6e-1541.35Show/hide
Query:  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPR-EPRPPPQPQSETSEFGIRTN
        +LF++GLS  T+++ L+ AF  FG+LVE K+I D+ + RSKG+ F+ Y T E    A + MN + ++GW+I VD AK R   R PP   S  S   +R+ 
Subjt:  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPR-EPRPPPQPQSETSEFGIRTN

Query:  KTIG
           G
Subjt:  KTIG

Q8L440 Organelle RRM domain-containing protein 1, chloroplastic7.8e-1544.66Show/hide
Query:  SSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSE
        S  + + KLFI+GLS  T+++ L+ AF  FG+LVE K+I D+ + RSKG+ F+ Y T E A  A + MN K ++GW+I VD AK    +P  Q +S+ S 
Subjt:  SSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSE

Query:  FGI
        FG+
Subjt:  FGI

Q9FFZ6 Small RNA-binding protein 11, chloroplastic2.4e-1648.45Show/hide
Query:  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPRE----------PRPPPQP
        KLFI GLS  TT++ L EAFS  GQ+VEA+++ DR + RSKGFGFVT+A+ ++A+KA    N + L+G  IFVD AK ++           R PP P
Subjt:  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPRE----------PRPPPQP

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial3.2e-2457.45Show/hide
Query:  SPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS
        S  LF+SGLS+ TT E L+ AF+ FG++ +AKV+TDR +G SKGFGFV YAT+ED+ K   GM+ KFLDGWVIF + A+PRE     QPQ+  S
Subjt:  SPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS

Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic4.1e-1643.52Show/hide
Query:  SSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP-------RPPPQ
        SS+    KL++SGLS  TT++ L++ F  FG L+   ++ D+   R KGF F+ Y T E+A KA +GM+ KFLDG VIFV+ AK R         R  P+
Subjt:  SSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP-------RPPPQ

Query:  PQSETSEF
        PQS+   F
Subjt:  PQSETSEF

Arabidopsis top hitse value%identityAlignment
AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.9e-1743.52Show/hide
Query:  SSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP-------RPPPQ
        SS+    KL++SGLS  TT++ L++ F  FG L+   ++ D+   R KGF F+ Y T E+A KA +GM+ KFLDG VIFV+ AK R         R  P+
Subjt:  SSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP-------RPPPQ

Query:  PQSETSEF
        PQS+   F
Subjt:  PQSETSEF

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.2e-4970.55Show/hide
Query:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM
        MAF+SS RR++ GS     SS+L S    +R  STLTSP+LF+SGLSRLTT+EKLQ+AF+SFGQLV+A+VITDR +GRSKGFGFVTYATIEDAEKA+  M
Subjt:  MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGM

Query:  NAKFLDGWVIFVDPAKPREPRPPPQ--PQSETSEFGIRTNKTIGWC
        NAKFLDGWVIFVDPA+PREPR P Q  P   +SE G  TNKTIGWC
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPQ--PQSETSEFGIRTNKTIGWC

AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.2e-1648.78Show/hide
Query:  SPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPRE
        S +LF+S LS  TTD+ L++ FS FGQ+ EA++I D  T R KGFGF+T+ + +DA KA + ++ K +DG +IFV+ AK  E
Subjt:  SPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPRE

AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein1.7e-1748.45Show/hide
Query:  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPRE----------PRPPPQP
        KLFI GLS  TT++ L EAFS  GQ+VEA+++ DR + RSKGFGFVT+A+ ++A+KA    N + L+G  IFVD AK ++           R PP P
Subjt:  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPRE----------PRPPPQP

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.2e-2557.45Show/hide
Query:  SPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS
        S  LF+SGLS+ TT E L+ AF+ FG++ +AKV+TDR +G SKGFGFV YAT+ED+ K   GM+ KFLDGWVIF + A+PRE     QPQ+  S
Subjt:  SPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCCTCTCCAGTGTAAGGCGCGTTCTTAATGGATCTTCTTCTTCATCTGCTTCCTCCATTCTGAAATCGCAGTGGACTACCCTTCGTCTCAGTTCAACTCTCAC
CTCGCCGAAGCTCTTCATCAGTGGTCTTTCAAGATTAACCACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCCTTTGGTCAGCTCGTAGAAGCGAAAGTTATAACCGACA
GGGCAACGGGAAGATCAAAGGGATTCGGTTTTGTAACGTACGCCACAATAGAAGATGCTGAGAAAGCTAGAGAGGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATT
TTTGTTGATCCTGCCAAACCCAGAGAGCCTAGGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGT
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTCCTCTCCAGTGTAAGGCGCGTTCTTAATGGATCTTCTTCTTCATCTGCTTCCTCCATTCTGAAATCGCAGTGGACTACCCTTCGTCTCAGTTCAACTCTCAC
CTCGCCGAAGCTCTTCATCAGTGGTCTTTCAAGATTAACCACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCCTTTGGTCAGCTCGTAGAAGCGAAAGTTATAACCGACA
GGGCAACGGGAAGATCAAAGGGATTCGGTTTTGTAACGTACGCCACAATAGAAGATGCTGAGAAAGCTAGAGAGGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATT
TTTGTTGATCCTGCCAAACCCAGAGAGCCTAGGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGT
Protein sequenceShow/hide protein sequence
MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVI
FVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG