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MS015915 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015915
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransducin/WD40 repeat-like superfamily protein, putative
Genome locationscaffold943_2:860723..861298
RNA-Seq ExpressionMS015915
SyntenyMS015915
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027328.1 hypothetical protein SDJN02_11340, partial [Cucurbita argyrosperma subsp. argyrosperma]6.2e-5574.1Show/hide
Query:  GGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTPFSRDKDPQGRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKM
        GGGGDG FSPRATVEDIQRRLLRPSS+HSP PTPFSR KD QGRNS Q            EAKEGET +++K+KLEDYLDPVLLSA++SKI RA+KVPKM
Subjt:  GGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTPFSRDKDPQGRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKM

Query:  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTAL
          K+EV DF WPV ELRMLM+DS VGK KI+ VNL  DSDNL ENDE+G DVKFSTPFQKFEQTAL
Subjt:  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTAL

XP_022143722.1 uncharacterized protein LOC111013563 [Momordica charantia]1.7e-7695.06Show/hide
Query:  MEGGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTP---FSRDKDPQGRNSLQLEAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKMTPKKEV
        MEGGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTP   FSR KDPQ RNSLQLEAKEGETVSKKKKKLEDYLDPVLLSA TSKIGRAKKVPKMTPKKEV
Subjt:  MEGGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTP---FSRDKDPQGRNSLQLEAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKMTPKKEV

Query:  EDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL
        EDFLWPVDELRMLMEDSEVGKEKIDTV LNTDSDNLVENDEDGSD+KFSTPFQKFEQTALIL
Subjt:  EDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL

XP_022962693.1 uncharacterized protein LOC111463108 [Cucurbita moschata]2.1e-5573.21Show/hide
Query:  GGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTPFSRDKDPQGRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKM
        GGGGDG FSPRA+VEDIQRRLLRPSS+HSP PTPFSR KD QGRNS Q            EAKEGET +++K+KLEDYLDPVLLSA++SKI RA+KVPKM
Subjt:  GGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTPFSRDKDPQGRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKM

Query:  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL
          K+EV DF WPV ELRMLM+DS VGK KI+TVNL  DSDNL EN+E+G DVKFSTPFQKFEQTAL+L
Subjt:  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL

XP_022972790.1 uncharacterized protein LOC111471294 isoform X1 [Cucurbita maxima]3.7e-5573.81Show/hide
Query:  GGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTPFSRDKDPQGRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKM
        GGGGDG FSPRATVEDIQRRLLRPSS+HSP PTPFSR KD QGRNS Q            EAKEGET S +K+KLEDYLDPVLLSA++SKI RA+KVPKM
Subjt:  GGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTPFSRDKDPQGRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKM

Query:  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL
        T K+EV DF WPV ELRMLM+DS VGK K +TVNL  DSD L ENDE+G DVK STPFQKFEQTAL+L
Subjt:  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL

XP_023518840.1 uncharacterized protein LOC111782239 [Cucurbita pepo subsp. pepo]2.3e-5775.6Show/hide
Query:  GGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTPFSRDKDPQGRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKM
        GGGGDG FSPRATVEDIQRRLLRPSS+HSP PTPFSR KD QGRNS Q            EAKEGET S +K+KLEDYLDPVLLSA++SKI RA+KVPKM
Subjt:  GGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTPFSRDKDPQGRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKM

Query:  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL
        T K+EV DF WPV ELRMLM+DS VGK KI+TVNL  DSDNL ENDE+G DVKFSTPFQKFEQTAL+L
Subjt:  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL

TrEMBL top hitse value%identityAlignment
A0A0A0L270 Uncharacterized protein1.4e-4768.67Show/hide
Query:  GGGDGDFSPRATVEDIQRRLLRP-SSLHSPLPTPFSRDKDPQGRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKM
        GGG+G FS RATVEDI+RRLLRP SSLHSP PTPFS  K+ Q RNS Q            EAK+GET S K++KLEDYLDPVLLSAI+SKI R +K+PK+
Subjt:  GGGDGDFSPRATVEDIQRRLLRP-SSLHSPLPTPFSRDKDPQGRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKM

Query:  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTAL
        T K++V DF W VDELRM  ED+ VGKEKID VNL  DSDNL+END DG DVKFSTPFQKFEQ AL
Subjt:  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTAL

A0A5A7STW4 Putative Transducin/WD40 repeat-like superfamily protein3.0e-4766.47Show/hide
Query:  GGGDGDFSPRATVEDIQRRLLRP-SSLHSPLPTP--------FSRDKDPQGRNSLQLEA-----KEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVP
        GGGDG FSPRATVEDIQRRLLRP SSLHSP P P        FS  K+ Q RNS Q EA          +S K++KLEDYLDPVLLSAI+SKI R +K+P
Subjt:  GGGDGDFSPRATVEDIQRRLLRP-SSLHSPLPTP--------FSRDKDPQGRNSLQLEA-----KEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVP

Query:  KMTPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL
        ++T K+EV DF W VDELRM  ED+ VGKEKID VNL  DSDNL+END DG DVKFSTPFQKFEQ AL+L
Subjt:  KMTPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL

A0A6J1CRN4 uncharacterized protein LOC1110135638.2e-7795.06Show/hide
Query:  MEGGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTP---FSRDKDPQGRNSLQLEAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKMTPKKEV
        MEGGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTP   FSR KDPQ RNSLQLEAKEGETVSKKKKKLEDYLDPVLLSA TSKIGRAKKVPKMTPKKEV
Subjt:  MEGGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTP---FSRDKDPQGRNSLQLEAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKMTPKKEV

Query:  EDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL
        EDFLWPVDELRMLMEDSEVGKEKIDTV LNTDSDNLVENDEDGSD+KFSTPFQKFEQTALIL
Subjt:  EDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL

A0A6J1HFI5 uncharacterized protein LOC1114631081.0e-5573.21Show/hide
Query:  GGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTPFSRDKDPQGRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKM
        GGGGDG FSPRA+VEDIQRRLLRPSS+HSP PTPFSR KD QGRNS Q            EAKEGET +++K+KLEDYLDPVLLSA++SKI RA+KVPKM
Subjt:  GGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTPFSRDKDPQGRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKM

Query:  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL
          K+EV DF WPV ELRMLM+DS VGK KI+TVNL  DSDNL EN+E+G DVKFSTPFQKFEQTAL+L
Subjt:  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL

A0A6J1I9M7 uncharacterized protein LOC111471294 isoform X11.8e-5573.81Show/hide
Query:  GGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTPFSRDKDPQGRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKM
        GGGGDG FSPRATVEDIQRRLLRPSS+HSP PTPFSR KD QGRNS Q            EAKEGET S +K+KLEDYLDPVLLSA++SKI RA+KVPKM
Subjt:  GGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTPFSRDKDPQGRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKM

Query:  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL
        T K+EV DF WPV ELRMLM+DS VGK K +TVNL  DSD L ENDE+G DVK STPFQKFEQTAL+L
Subjt:  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGAGGAGGCGGAGATGGAGATTTTAGTCCACGCGCCACCGTAGAAGACATACAGAGACGGCTGCTCCGACCTTCCTCGCTTCACTCTCCTCTGCCGACGCCGTT
TTCTCGTGACAAGGATCCTCAAGGCCGAAATTCGTTGCAATTAGAAGCGAAAGAAGGAGAAACCGTGAGCAAGAAGAAGAAGAAACTCGAAGATTACTTGGATCCGGTTC
TTCTCTCTGCCATTACTTCGAAGATCGGTCGTGCAAAGAAGGTTCCTAAGATGACGCCGAAGAAAGAGGTTGAGGATTTCTTATGGCCTGTCGATGAATTGAGGATGCTG
ATGGAGGACTCAGAGGTTGGAAAGGAGAAAATTGATACTGTTAATCTTAATACTGACTCCGATAATCTAGTAGAAAACGATGAAGACGGATCGGATGTTAAATTCTCTAC
TCCGTTCCAAAAGTTTGAGCAGACTGCTTTGATACTT
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGAGGAGGCGGAGATGGAGATTTTAGTCCACGCGCCACCGTAGAAGACATACAGAGACGGCTGCTCCGACCTTCCTCGCTTCACTCTCCTCTGCCGACGCCGTT
TTCTCGTGACAAGGATCCTCAAGGCCGAAATTCGTTGCAATTAGAAGCGAAAGAAGGAGAAACCGTGAGCAAGAAGAAGAAGAAACTCGAAGATTACTTGGATCCGGTTC
TTCTCTCTGCCATTACTTCGAAGATCGGTCGTGCAAAGAAGGTTCCTAAGATGACGCCGAAGAAAGAGGTTGAGGATTTCTTATGGCCTGTCGATGAATTGAGGATGCTG
ATGGAGGACTCAGAGGTTGGAAAGGAGAAAATTGATACTGTTAATCTTAATACTGACTCCGATAATCTAGTAGAAAACGATGAAGACGGATCGGATGTTAAATTCTCTAC
TCCGTTCCAAAAGTTTGAGCAGACTGCTTTGATACTT
Protein sequenceShow/hide protein sequence
MEGGGGDGDFSPRATVEDIQRRLLRPSSLHSPLPTPFSRDKDPQGRNSLQLEAKEGETVSKKKKKLEDYLDPVLLSAITSKIGRAKKVPKMTPKKEVEDFLWPVDELRML
MEDSEVGKEKIDTVNLNTDSDNLVENDEDGSDVKFSTPFQKFEQTALIL