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MS015918 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015918
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncyclin-dependent protein kinase inhibitor SMR2-like
Genome locationscaffold943_2:874583..875005
RNA-Seq ExpressionMS015918
SyntenyMS015918
Gene Ontology termsGO:0032875 - regulation of DNA endoreduplication (biological process)
InterPro domainsIPR040389 - Cyclin-dependent protein kinase inhibitor SMR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603657.1 Cyclin-dependent protein kinase inhibitor SMR3, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3459.48Show/hide
Query:  MASHFQEISLSPSPQISLPSV-SPESFLLNLEDANNQIDFLFALN-----------TNQQQARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPRRPKP
        MAS FQEIS    P+IS  ++ +P+SF +NL DA NQIDF+FALN            +  ++   DSIS DDDGFRTPTSSDHKIPV++QCPPAPRRPKP
Subjt:  MASHFQEISLSPSPQISLPSV-SPESFLLNLEDANNQIDFLFALN-----------TNQQQARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPRRPKP

Query:  ISCRSRRSSPRLASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDDHEDE
        ISC   R+ PR  SGVRRGFRVYISDEI +SIF     HQK KKAR++ +  E
Subjt:  ISCRSRRSSPRLASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDDHEDE

XP_022143885.1 cyclin-dependent protein kinase inhibitor SMR2-like [Momordica charantia]4.7e-7099.29Show/hide
Query:  MASHFQEISLSPSPQISLPSVSPESFLLNLEDANNQIDFLFALNTNQQQARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPRRPKPISCRSRRSSPRL
        MASHFQEISLSPSPQISLPS+SPESFLLNLEDANNQIDFLFALNTNQQQARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPRRPKPISCRSRRSSPRL
Subjt:  MASHFQEISLSPSPQISLPSVSPESFLLNLEDANNQIDFLFALNTNQQQARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPRRPKPISCRSRRSSPRL

Query:  ASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDDHEDE
        ASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDDHEDE
Subjt:  ASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDDHEDE

XP_022950456.1 uncharacterized protein LOC111453550 [Cucurbita moschata]2.4e-3459.48Show/hide
Query:  MASHFQEISLSPSPQISLPSV-SPESFLLNLEDANNQIDFLFALN-----------TNQQQARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPRRPKP
        MAS FQEIS    P+IS  ++ +P+SF +NL DA NQIDF+FALN            +  ++   DSIS DDDGFRTPTSSDHKIPV++QCPPAPRRPKP
Subjt:  MASHFQEISLSPSPQISLPSV-SPESFLLNLEDANNQIDFLFALN-----------TNQQQARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPRRPKP

Query:  ISCRSRRSSPRLASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDDHEDE
        ISC   R+ PR  SGVRRGFRVYISDEI +SIF     HQK KKAR++ +  E
Subjt:  ISCRSRRSSPRLASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDDHEDE

XP_023518540.1 uncharacterized protein LOC111782016 [Cucurbita pepo subsp. pepo]9.8e-2857.42Show/hide
Query:  MASHFQEISLSPSPQISLPSVSPESFLLNLEDANNQIDFLFALNTN----QQQARRDDS-------ISA--DDDGFRTPTSSDHKIPVIKQCPPAPRRPK
        MAS F+EISL           +PESF + LEDA +QI+F+FA+       + Q R D S       ISA  D+DGFRTPTSSD+KIP+++ CPPAPRRPK
Subjt:  MASHFQEISLSPSPQISLPSVSPESFLLNLEDANNQIDFLFALNTN----QQQARRDDS-------ISA--DDDGFRTPTSSDHKIPVIKQCPPAPRRPK

Query:  PISCRSRRSSPRLASGVRRGFRVYISDEIVESIFSSSFA----HQKMKKARRDDH
        PIS    R+SPR+ SGVRRGFRVYISDEIV+SIFSSSF       K KKAR+DDH
Subjt:  PISCRSRRSSPRLASGVRRGFRVYISDEIVESIFSSSFA----HQKMKKARRDDH

XP_038877666.1 cyclin-dependent protein kinase inhibitor SMR3-like [Benincasa hispida]4.3e-3161.11Show/hide
Query:  MASHFQEISLSPSPQISLPSVSPE-SFLLNLEDANNQIDFLFALNTNQQQARRDDSISA---DDDGFRTPTSSDHKIPVIKQCPPAPRRPKPISCRSRRS
        MAS FQEISL+   QIS  +++P+ +F L      NQIDF+F+LN    +    +SISA   DDDGFRTP SSDHKIPV++ CPPAP+RPKPIS  SR S
Subjt:  MASHFQEISLSPSPQISLPSVSPE-SFLLNLEDANNQIDFLFALNTNQQQARRDDSISA---DDDGFRTPTSSDHKIPVIKQCPPAPRRPKPISCRSRRS

Query:  SPRLASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDDHED
        S R ASGVRRGFRVYISDEIV+SIF S   HQK KK  R D +D
Subjt:  SPRLASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDDHED

TrEMBL top hitse value%identityAlignment
A0A0A0KZJ9 Uncharacterized protein4.8e-2053.38Show/hide
Query:  MASHFQEISLSPSP----QISLPSVSPESFLLNLEDANNQIDFLFALNTNQQQARRDDSISADD------DGFRTPTSSDHKIPVIKQCPPAPRRPKPIS
        MAS FQEIS  P P    QISL  +    FL +   + +         +   Q +   SISA D      DGF TP SS HKIPVI  CPPAP RPKPIS
Subjt:  MASHFQEISLSPSP----QISLPSVSPESFLLNLEDANNQIDFLFALNTNQQQARRDDSISADD------DGFRTPTSSDHKIPVIKQCPPAPRRPKPIS

Query:  CRSRRSSPRLASGVRRGFRVYISDEIVESIFSSSFAHQK-MKKARRDD
          SR  SPR ASGVRRGF VYISD+IV+SIFS    HQK  KKAR+DD
Subjt:  CRSRRSSPRLASGVRRGFRVYISDEIVESIFSSSFAHQK-MKKARRDD

A0A5A7SN91 Cyclin-dependent protein kinase inhibitor SMR3-like3.1e-1950.64Show/hide
Query:  MASHFQEISLSPSPQISLPSVSPESFLLNLEDANNQIDFLF-----ALNTNQQQARRDDSI---------SADD-----DGFRTPTSSDHKIPVIKQCPP
        M S FQEI  SP P + LP    +  L+ L+     IDFLF     ++ T        DSI         + DD     DGF TP SS HKIPVI  CPP
Subjt:  MASHFQEISLSPSPQISLPSVSPESFLLNLEDANNQIDFLF-----ALNTNQQQARRDDSI---------SADD-----DGFRTPTSSDHKIPVIKQCPP

Query:  APRRPKPISCRSRRSSPRLASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDD
        AP RPKPIS  SR  S R AS VRRGF VYISDEIV+SIFS    H K KKAR+DD
Subjt:  APRRPKPISCRSRRSSPRLASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDD

A0A5D2MEF8 Uncharacterized protein5.1e-1446.09Show/hide
Query:  EDANNQIDF---LFALNTNQQQARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPRRPKPISCRSRR-SSPRLASGVRRGFRVYISDEIVESIFSSSF-
        ED  N ++F      ++  + +A  D     DDDGF+TPTS DHKIPV+KQCPPAPR+PKP+S   R+ SSP  +SG R   ++  + E VES+F S   
Subjt:  EDANNQIDF---LFALNTNQQQARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPRRPKPISCRSRR-SSPRLASGVRRGFRVYISDEIVESIFSSSF-

Query:  --AHQKMKKARRDDH
           H+K+KKAR++D+
Subjt:  --AHQKMKKARRDDH

A0A6J1CQ22 cyclin-dependent protein kinase inhibitor SMR2-like2.3e-7099.29Show/hide
Query:  MASHFQEISLSPSPQISLPSVSPESFLLNLEDANNQIDFLFALNTNQQQARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPRRPKPISCRSRRSSPRL
        MASHFQEISLSPSPQISLPS+SPESFLLNLEDANNQIDFLFALNTNQQQARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPRRPKPISCRSRRSSPRL
Subjt:  MASHFQEISLSPSPQISLPSVSPESFLLNLEDANNQIDFLFALNTNQQQARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPRRPKPISCRSRRSSPRL

Query:  ASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDDHEDE
        ASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDDHEDE
Subjt:  ASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDDHEDE

A0A6J1GEW0 uncharacterized protein LOC1114535501.2e-3459.48Show/hide
Query:  MASHFQEISLSPSPQISLPSV-SPESFLLNLEDANNQIDFLFALN-----------TNQQQARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPRRPKP
        MAS FQEIS    P+IS  ++ +P+SF +NL DA NQIDF+FALN            +  ++   DSIS DDDGFRTPTSSDHKIPV++QCPPAPRRPKP
Subjt:  MASHFQEISLSPSPQISLPSV-SPESFLLNLEDANNQIDFLFALN-----------TNQQQARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPRRPKP

Query:  ISCRSRRSSPRLASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDDHEDE
        ISC   R+ PR  SGVRRGFRVYISDEI +SIF     HQK KKAR++ +  E
Subjt:  ISCRSRRSSPRLASGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDDHEDE

SwissProt top hitse value%identityAlignment
Q9LZ60 Cyclin-dependent protein kinase inhibitor SMR31.6e-0457.89Show/hide
Query:  DDSISADDDGFRTPTSSDHKIPVIKQ--CPPAPRRPKP
        +D    +++G +TPTSSDHKIP +K   CPPAPR+PKP
Subjt:  DDSISADDDGFRTPTSSDHKIPVIKQ--CPPAPRRPKP

Arabidopsis top hitse value%identityAlignment
AT1G08180.1 unknown protein1.2e-0433.33Show/hide
Query:  NQQQARRDDSISADD--DGFRTPTSSDHKIPVIKQCPPAPR-RPKPISCRSRRSSPRLASGVRRGFRVYISDEIVESIFSSSFAHQKMKK
        +Q++    DS   ++  +   TPTSSDHKIP ++ CPP PR RP+ IS   +    RL+  +R      +  + VE++F     H + K+
Subjt:  NQQQARRDDSISADD--DGFRTPTSSDHKIPVIKQCPPAPR-RPKPISCRSRRSSPRLASGVRRGFRVYISDEIVESIFSSSFAHQKMKK

AT2G37610.1 unknown protein6.2e-0432.73Show/hide
Query:  QARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPR-------RPKPISCRSRRS
        +   ++ +  ++DGF+TPT  +++IP++++CPPAP        R + + CR R S
Subjt:  QARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPR-------RPKPISCRSRRS

AT5G02420.1 unknown protein1.1e-0557.89Show/hide
Query:  DDSISADDDGFRTPTSSDHKIPVIKQ--CPPAPRRPKP
        +D    +++G +TPTSSDHKIP +K   CPPAPR+PKP
Subjt:  DDSISADDDGFRTPTSSDHKIPVIKQ--CPPAPRRPKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCGCACTTCCAAGAAATCTCCCTCTCCCCATCGCCGCAGATTTCCTTGCCCTCCGTTTCTCCAGAATCATTCCTCCTCAATTTGGAAGACGCCAACAACCAGAT
CGACTTTCTTTTCGCGCTCAACACTAATCAGCAACAAGCACGACGCGACGATTCCATCTCCGCCGACGACGACGGCTTCAGAACGCCGACCTCTTCCGATCACAAGATTC
CGGTGATTAAACAATGTCCGCCGGCGCCAAGAAGGCCGAAACCGATCTCCTGCCGCTCGAGAAGATCGTCGCCGAGACTAGCATCCGGCGTTCGCAGAGGTTTCAGAGTC
TATATCTCCGACGAAATCGTCGAGTCGATCTTCTCCTCCAGTTTTGCGCACCAGAAGATGAAGAAAGCTCGGAGGGACGATCATGAAGATGAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCGCACTTCCAAGAAATCTCCCTCTCCCCATCGCCGCAGATTTCCTTGCCCTCCGTTTCTCCAGAATCATTCCTCCTCAATTTGGAAGACGCCAACAACCAGAT
CGACTTTCTTTTCGCGCTCAACACTAATCAGCAACAAGCACGACGCGACGATTCCATCTCCGCCGACGACGACGGCTTCAGAACGCCGACCTCTTCCGATCACAAGATTC
CGGTGATTAAACAATGTCCGCCGGCGCCAAGAAGGCCGAAACCGATCTCCTGCCGCTCGAGAAGATCGTCGCCGAGACTAGCATCCGGCGTTCGCAGAGGTTTCAGAGTC
TATATCTCCGACGAAATCGTCGAGTCGATCTTCTCCTCCAGTTTTGCGCACCAGAAGATGAAGAAAGCTCGGAGGGACGATCATGAAGATGAG
Protein sequenceShow/hide protein sequence
MASHFQEISLSPSPQISLPSVSPESFLLNLEDANNQIDFLFALNTNQQQARRDDSISADDDGFRTPTSSDHKIPVIKQCPPAPRRPKPISCRSRRSSPRLASGVRRGFRV
YISDEIVESIFSSSFAHQKMKKARRDDHEDE