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MS015934 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015934
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like
Genome locationscaffold943_2:992888..993601
RNA-Seq ExpressionMS015934
SyntenyMS015934
Gene Ontology termsGO:0009639 - response to red or far red light (biological process)
GO:0005622 - intracellular (cellular component)
InterPro domainsIPR037766 - Protein FAR-RED ELONGATED HYPOCOTYL 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603645.1 Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE protein, partial [Cucurbita argyrosperma subsp. sororia]7.3e-3755.43Show/hide
Query:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGP-TPSVSFPYG-GNFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALME-------SGLHI
        F GFQPW+T  FDVKKKRKLL   EQLS PTPKLP WGP + S+SFPYG  +FKFN+   K  EE E + TK A E K++S  E  ++         L +
Subjt:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGP-TPSVSFPYG-GNFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALME-------SGLHI

Query:  SYGHEEDLLEFGSTD-----EECY----------RDSKHDFVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL
        +YGHEEDLLEFGS       E+C            DSKHDFVLSSGRW++DP +ESK + PTIDQEFEQYFS +L
Subjt:  SYGHEEDLLEFGSTD-----EECY----------RDSKHDFVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL

KAG7033829.1 hypothetical protein SDJN02_03554, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-3654.86Show/hide
Query:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGP-TPSVSFPYG-GNFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALME-------SGLHI
        F GFQPW+T  FDVKKKRKLL   EQLS PTPKLP WGP + S+SFPYG  + KFN+   K  EE E + TK A E K++S  E  ++         L +
Subjt:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGP-TPSVSFPYG-GNFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALME-------SGLHI

Query:  SYGHEEDLLEFGSTD-----EECY----------RDSKHDFVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL
        +YGHEEDLLEFGS       E+C            DSKHDFVLSSGRW++DP +ESK + PTIDQEFEQYFS +L
Subjt:  SYGHEEDLLEFGSTD-----EECY----------RDSKHDFVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL

XP_022143715.1 uncharacterized protein LOC111013556 [Momordica charantia]2.0e-7996.73Show/hide
Query:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGPTPSVSFPYGGNFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALMESGLHISYGHEEDLL
        FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGPTPSVSFPYGGNFKFNQNPQKDVEEEEIN TKRAMEVKEISK+EALMESGLHISYGH EDLL
Subjt:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGPTPSVSFPYGGNFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALMESGLHISYGHEEDLL

Query:  EFGSTDEECYRDSKHDFVLSSGRWNVDPPS--ESKTLKPTIDQEFEQYFSVLL
        EFGSTDEECYRDSKHDFVLSSGRWNVDPPS  ESKTLKPTIDQEFEQYFSVLL
Subjt:  EFGSTDEECYRDSKHDFVLSSGRWNVDPPS--ESKTLKPTIDQEFEQYFSVLL

XP_023544624.1 protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like [Cucurbita pepo subsp. pepo]6.6e-3856Show/hide
Query:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGP-TPSVSFPYG-GNFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALME-------SGLHI
        FPGFQPW+T  FDVKKKRKLL   EQLS PTPKLP WGP + S+SFPYG  +FKFN+   K  EE E + TK A E K++S  E  ++         L +
Subjt:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGP-TPSVSFPYG-GNFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALME-------SGLHI

Query:  SYGHEEDLLEFG-----STDEECY----------RDSKHDFVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL
        +YGHEEDLLEFG     S  E+C            DSKHDFVLSSGRW++DP +ESK + PTIDQEFEQYFS +L
Subjt:  SYGHEEDLLEFG-----STDEECY----------RDSKHDFVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL

XP_038883311.1 protein FAR-RED ELONGATED HYPOCOTYL 1-like [Benincasa hispida]3.9e-3856.73Show/hide
Query:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGPTPSVSFPYGG-NFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALME---SGLHISYGHE
        F  FQPWNT G DVKKKR+LLI  +QLS PT KLP WGP+ S+S P+G  NFKF++  Q++ E EE   T+ A+E KE SK +  M+     L  SYGHE
Subjt:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGPTPSVSFPYGG-NFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALME---SGLHISYGHE

Query:  EDLLEFGSTDEECY----------------RDSKHDFVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL
        EDLLEFGS    C                  +SKHDFVLSSGRW+VDP +ESKT+KPTIDQEFEQYFSV L
Subjt:  EDLLEFGSTDEECY----------------RDSKHDFVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL

TrEMBL top hitse value%identityAlignment
A0A0A0KZL8 Uncharacterized protein4.8e-3453.33Show/hide
Query:  GFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGPTPSVSFPYG-GNFKFNQNPQKDVEE-----------EEINFTKRAME-VKEISKVEALMESG-
        G Q WNT   DVK KR+LLI  +QLS PT KLPRWGP  S+S P+G  NFKFN  PQ++ +E           EE   TK A++  KE+S+ +  M+ G 
Subjt:  GFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGPTPSVSFPYG-GNFKFNQNPQKDVEE-----------EEINFTKRAME-VKEISKVEALMESG-

Query:  --LHISYGHEEDLLEFGSTD-----EECY----------RDSKHDFVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL
          L  SYGHEEDLLEFGS +     EEC            DSK +FVLSSGRW+VD  +ESK +KPTIDQEFEQYFSVLL
Subjt:  --LHISYGHEEDLLEFGSTD-----EECY----------RDSKHDFVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL

A0A1S3BJU4 uncharacterized protein LOC1034903811.8e-3353.53Show/hide
Query:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGPTPSVSFPYG-GNFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALME---SGLHISYGHE
        F GFQ WNT   DVKKKR+LLI  +QLS PT KLP WG + S+S P+G  NFKFN+ P+   E E    TK  ++ KE+S+ +  M+     L  SYGHE
Subjt:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGPTPSVSFPYG-GNFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALME---SGLHISYGHE

Query:  EDLLEFGSTDEECY---------------RDSKHDFVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL
        EDLLEFG+    C                 DSK +FVLSSGRW+VD  +ESKT+KPTIDQEFEQYFSVLL
Subjt:  EDLLEFGSTDEECY---------------RDSKHDFVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL

A0A6J1CPJ7 uncharacterized protein LOC1110135569.8e-8096.73Show/hide
Query:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGPTPSVSFPYGGNFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALMESGLHISYGHEEDLL
        FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGPTPSVSFPYGGNFKFNQNPQKDVEEEEIN TKRAMEVKEISK+EALMESGLHISYGH EDLL
Subjt:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGPTPSVSFPYGGNFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALMESGLHISYGHEEDLL

Query:  EFGSTDEECYRDSKHDFVLSSGRWNVDPPS--ESKTLKPTIDQEFEQYFSVLL
        EFGSTDEECYRDSKHDFVLSSGRWNVDPPS  ESKTLKPTIDQEFEQYFSVLL
Subjt:  EFGSTDEECYRDSKHDFVLSSGRWNVDPPS--ESKTLKPTIDQEFEQYFSVLL

A0A6J1GGJ6 protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like1.3e-3453.71Show/hide
Query:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGP-TPSVSFPYG-GNFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALME-------SGLHI
        F  FQPW+T  FDVKKKRKLL   EQLS PTPKLP WGP + S+SFPYG  +FKFN   +K  +E E + TK A E K++S  E  ++         L +
Subjt:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGP-TPSVSFPYG-GNFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALME-------SGLHI

Query:  SYGHEEDLLEFGSTDE----ECY-----------RDSKHDFVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL
        +YGHEEDLLEFGS       E Y            DS HDFVLSSGRW++DP +ESK + PTIDQEFEQYFS +L
Subjt:  SYGHEEDLLEFGSTDE----ECY-----------RDSKHDFVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL

A0A6J1IMA5 protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like4.0e-3354.71Show/hide
Query:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGP-TPSVSFPYG-GNFKFNQNPQKDVEEEEINFTKRA-MEVKEISKVEALMESGLHISYGHEE
        F GFQPW+T  FDVKKKRKLL   EQLS PTPKLP WGP + S+SFPYG  +FKFN+   K  EE E + TK A  E   I   +  ++  L ++YGHEE
Subjt:  FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGP-TPSVSFPYG-GNFKFNQNPQKDVEEEEINFTKRA-MEVKEISKVEALMESGLHISYGHEE

Query:  DLLEFGSTD-----EECY----------RDSKHD-FVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL
        DLLEFGS       E+C            DS HD FVLSSGRW++DP +ESK + P IDQEFEQYFS +L
Subjt:  DLLEFGSTD-----EECY----------RDSKHD-FVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL

SwissProt top hitse value%identityAlignment
A8MR65 Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE7.6e-0548.08Show/hide
Query:  EFGSTDEECYRDSKHDFVLSSGRWNV-DPPSESKTLKPTIDQEFEQYFSVLL
        EF   D +   +    ++LSS RW+V +  S+  T KPTIDQEFEQYFS L+
Subjt:  EFGSTDEECYRDSKHDFVLSSGRWNV-DPPSESKTLKPTIDQEFEQYFSVLL

Q8S4Q6 Protein FAR-RED ELONGATED HYPOCOTYL 15.8e-0536.26Show/hide
Query:  EEEINFTKRAMEVKEISKVEALMESGLHISYGHEEDLLEFGSTDEECYRDSKHDFVLSSGRW--NVDPPSESKTLKPTIDQEFEQYFSVLL
        E  +++      +++ S  E ++E+ L++    EE+       D +    +   FVLSSGRW  N D  +  +T KPTIDQEFEQYFS L+
Subjt:  EEEINFTKRAMEVKEISKVEALMESGLHISYGHEEDLLEFGSTDEECYRDSKHDFVLSSGRW--NVDPPSESKTLKPTIDQEFEQYFSVLL

Arabidopsis top hitse value%identityAlignment
AT2G37678.1 far-red elongated hypocotyl 14.1e-0636.26Show/hide
Query:  EEEINFTKRAMEVKEISKVEALMESGLHISYGHEEDLLEFGSTDEECYRDSKHDFVLSSGRW--NVDPPSESKTLKPTIDQEFEQYFSVLL
        E  +++      +++ S  E ++E+ L++    EE+       D +    +   FVLSSGRW  N D  +  +T KPTIDQEFEQYFS L+
Subjt:  EEEINFTKRAMEVKEISKVEALMESGLHISYGHEEDLLEFGSTDEECYRDSKHDFVLSSGRW--NVDPPSESKTLKPTIDQEFEQYFSVLL

AT5G02200.1 far-red-elongated hypocotyl1-like5.4e-0648.08Show/hide
Query:  EFGSTDEECYRDSKHDFVLSSGRWNV-DPPSESKTLKPTIDQEFEQYFSVLL
        EF   D +   +    ++LSS RW+V +  S+  T KPTIDQEFEQYFS L+
Subjt:  EFGSTDEECYRDSKHDFVLSSGRWNV-DPPSESKTLKPTIDQEFEQYFSVLL

AT5G02200.2 far-red-elongated hypocotyl1-like5.4e-0648.08Show/hide
Query:  EFGSTDEECYRDSKHDFVLSSGRWNV-DPPSESKTLKPTIDQEFEQYFSVLL
        EF   D +   +    ++LSS RW+V +  S+  T KPTIDQEFEQYFS L+
Subjt:  EFGSTDEECYRDSKHDFVLSSGRWNV-DPPSESKTLKPTIDQEFEQYFSVLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCCCTGGCTTTCAACCATGGAATACAGGAGGGTTTGATGTAAAGAAGAAGAGAAAGCTGCTAATTGAGCTTGAGCAACTAAGCTTTCCCACACCAAAGCTACCACGTTG
GGGTCCAACACCATCAGTTAGCTTTCCCTATGGGGGTAACTTCAAATTCAACCAAAACCCTCAAAAGGATGTAGAAGAAGAAGAAATAAATTTTACGAAAAGGGCGATGG
AAGTTAAGGAGATATCAAAAGTGGAGGCTCTAATGGAGAGTGGGTTGCATATAAGCTATGGCCATGAGGAAGATCTGCTGGAGTTTGGAAGCACTGATGAGGAATGTTAT
AGAGACTCCAAGCATGACTTTGTTTTGTCATCTGGGAGATGGAACGTAGACCCCCCCTCAGAATCCAAGACTCTCAAACCCACCATTGATCAAGAATTTGAGCAGTACTT
TTCTGTACTTTTG
mRNA sequenceShow/hide mRNA sequence
TTCCCTGGCTTTCAACCATGGAATACAGGAGGGTTTGATGTAAAGAAGAAGAGAAAGCTGCTAATTGAGCTTGAGCAACTAAGCTTTCCCACACCAAAGCTACCACGTTG
GGGTCCAACACCATCAGTTAGCTTTCCCTATGGGGGTAACTTCAAATTCAACCAAAACCCTCAAAAGGATGTAGAAGAAGAAGAAATAAATTTTACGAAAAGGGCGATGG
AAGTTAAGGAGATATCAAAAGTGGAGGCTCTAATGGAGAGTGGGTTGCATATAAGCTATGGCCATGAGGAAGATCTGCTGGAGTTTGGAAGCACTGATGAGGAATGTTAT
AGAGACTCCAAGCATGACTTTGTTTTGTCATCTGGGAGATGGAACGTAGACCCCCCCTCAGAATCCAAGACTCTCAAACCCACCATTGATCAAGAATTTGAGCAGTACTT
TTCTGTACTTTTG
Protein sequenceShow/hide protein sequence
FPGFQPWNTGGFDVKKKRKLLIELEQLSFPTPKLPRWGPTPSVSFPYGGNFKFNQNPQKDVEEEEINFTKRAMEVKEISKVEALMESGLHISYGHEEDLLEFGSTDEECY
RDSKHDFVLSSGRWNVDPPSESKTLKPTIDQEFEQYFSVLL