; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015952 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015952
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold582:114269..114559
RNA-Seq ExpressionMS015952
SyntenyMS015952
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CCA66036.1 hypothetical protein [Beta vulgaris subsp. vulgaris]6.6e-1539.8Show/hide
Query:  WAWHFNKNGMYSVKSGYKTE-MRHKLLMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC
        W W  +KNG ++V+S Y  E +  +    STS   N   W+K+WK ++PPK+++F WK  HN + V  N++K+GM +   CPRC  K E T+H++  C
Subjt:  WAWHFNKNGMYSVKSGYKTE-MRHKLLMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC

KAF7832946.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora]1.0e-1543.88Show/hide
Query:  WAWHFNKNGMYSVKSGYKTEMRHKL-LMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC
        W W    NG YSVKSGY+   R K+  +H T+       W+K+WK+Q+P KI+ F+W+VC  I+ V +NL K+GM+V P CP CS + E   H  + C
Subjt:  WAWHFNKNGMYSVKSGYKTEMRHKL-LMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC

PNX96384.1 ribonuclease H, partial [Trifolium pratense]1.9e-1438.95Show/hide
Query:  WHFNKNGMYSVKSGYKTEMRHKLLMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC
        W   ++G+YSVKSGY + M     +++T+++N++  W+ +WK+ +PPK    +W+V  N + V NNL K+G+   P+CPRC+  +E T+HV + C
Subjt:  WHFNKNGMYSVKSGYKTEMRHKLLMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC

PWA82942.1 hypothetical protein CTI12_AA174550 [Artemisia annua]1.9e-1437.37Show/hide
Query:  WHFNKNGMYSVKSGYKTEMRHKLL----MHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC
        WHF+  G Y+VKSGY+  + H+ +    + S+S+  N+ +W+ VW ++  PKI+ F WKVC N +    NL ++G   +P+CP C   +E  +H+L  C
Subjt:  WHFNKNGMYSVKSGYKTEMRHKLL----MHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC

XP_022155289.1 uncharacterized protein LOC111022426 [Momordica charantia]5.2e-2083.05Show/hide
Query:  MRHKLLMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPV
        MRHKL+MHSTSNSNNE  WRK WKIQMPPKIQV MWKVCHNII VL NLQKKGMEV  +
Subjt:  MRHKLLMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPV

TrEMBL top hitse value%identityAlignment
A0A1S8ACU2 Ribonuclease H-like superfamily protein3.8e-1641.05Show/hide
Query:  WHFNKNGMYSVKSGYKTEMRHKLLMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC
        WH++K G YSVKSGY+  MR K     +S+S+N   W  +W +++P KI++FMWK   N +    NL ++ M   P+CPRC +K E  +H ++ C
Subjt:  WHFNKNGMYSVKSGYKTEMRHKLLMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC

A0A2U1PB17 CCHC-type domain-containing protein9.2e-1537.37Show/hide
Query:  WHFNKNGMYSVKSGYKTEMRHKLL----MHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC
        WHF+  G Y+VKSGY+  + H+ +    + S+S+  N+ +W+ VW ++  PKI+ F WKVC N +    NL ++G   +P+CP C   +E  +H+L  C
Subjt:  WHFNKNGMYSVKSGYKTEMRHKLL----MHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC

A0A6J1DPU1 uncharacterized protein LOC1110224262.5e-2083.05Show/hide
Query:  MRHKLLMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPV
        MRHKL+MHSTSNSNNE  WRK WKIQMPPKIQV MWKVCHNII VL NLQKKGMEV  +
Subjt:  MRHKLLMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPV

A0A803Q1K6 Uncharacterized protein7.1e-1541.67Show/hide
Query:  WHFNKNGMYSVKSGYKTEMRHKLLMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKT-DHVLVRC
        WH++KNG YSVKSGY+         H ++  +   WW+K+W++  PPK++ F+WKV HN +    NL K+G+  + VC RCS  VE++  H L  C
Subjt:  WHFNKNGMYSVKSGYKTEMRHKLLMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKT-DHVLVRC

F4NCI4 Reverse transcriptase domain-containing protein3.2e-1539.8Show/hide
Query:  WAWHFNKNGMYSVKSGYKTE-MRHKLLMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC
        W W  +KNG ++V+S Y  E +  +    STS   N   W+K+WK ++PPK+++F WK  HN + V  N++K+GM +   CPRC  K E T+H++  C
Subjt:  WAWHFNKNGMYSVKSGYKTE-MRHKLLMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G25270.1 Ribonuclease H-like superfamily protein1.7e-0531.58Show/hide
Query:  KVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC
        K+WK++  PKI+ F+WK+    +   +NL+++ +   P C RC  + E + H+   C
Subjt:  KVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC

AT4G29090.1 Ribonuclease H-like superfamily protein2.2e-0832Show/hide
Query:  WAWHFNKNGMYSVKSGY--KTEMRHKLLM-HSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC
        + W +  +G Y+VKSGY   T++ +K       S  +    ++K+WK Q  PKIQ F+WK   N + V   L  + +     C RC    E  +H+L +C
Subjt:  WAWHFNKNGMYSVKSGY--KTEMRHKLLM-HSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGGCATGGCACTTTAATAAGAATGGGATGTACTCAGTCAAGAGCGGGTACAAAACAGAAATGAGACATAAGCTACTGATGCACTCAACAAGTAACAGTAACAATGAATT
TTGGTGGAGGAAGGTTTGGAAAATCCAGATGCCACCTAAAATTCAAGTGTTTATGTGGAAAGTGTGCCATAACATCATCCATGTGCTTAATAATCTTCAGAAGAAAGGGA
TGGAGGTGACACCAGTTTGTCCGAGGTGTTCTTTAAAAGTTGAGAAAACTGATCATGTGCTGGTTCGGTGC
mRNA sequenceShow/hide mRNA sequence
TGGGCATGGCACTTTAATAAGAATGGGATGTACTCAGTCAAGAGCGGGTACAAAACAGAAATGAGACATAAGCTACTGATGCACTCAACAAGTAACAGTAACAATGAATT
TTGGTGGAGGAAGGTTTGGAAAATCCAGATGCCACCTAAAATTCAAGTGTTTATGTGGAAAGTGTGCCATAACATCATCCATGTGCTTAATAATCTTCAGAAGAAAGGGA
TGGAGGTGACACCAGTTTGTCCGAGGTGTTCTTTAAAAGTTGAGAAAACTGATCATGTGCTGGTTCGGTGC
Protein sequenceShow/hide protein sequence
WAWHFNKNGMYSVKSGYKTEMRHKLLMHSTSNSNNEFWWRKVWKIQMPPKIQVFMWKVCHNIIHVLNNLQKKGMEVTPVCPRCSLKVEKTDHVLVRC