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MS015953 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015953
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold582:122966..123136
RNA-Seq ExpressionMS015953
SyntenyMS015953
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG0532780.1 hypothetical protein BDA96_04G136500, partial [Sorghum bicolor]3.9e-0740.35Show/hide
Query:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDCKATVE
        +K+K D+ + LRRG+ ++ +     CW P++YE +P+F + CG LGH+ K+C + VE
Subjt:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDCKATVE

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]3.1e-1255.77Show/hide
Query:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDC
        V++++DV + L RG+K+ LDG  G CW+P+QYE+LPDF +HCG L H++KDC
Subjt:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.5e-1151.85Show/hide
Query:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDCKA
        +++  D+T+ LRRG+KI +DG  G CW+P+QYE+LPDF + CG++GH   DC A
Subjt:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDCKA

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.7e-0752.27Show/hide
Query:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGI
        V++  D+++ LRRG+K+ LDG  G  W+P+QYE+LPDF +HCG+
Subjt:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGI

XP_028117212.1 uncharacterized protein LOC114314884 [Camellia sinensis]2.3e-0748.08Show/hide
Query:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDC
        ++I+ ++ + LRRG+K+ L G+    W+ +QYE+LP+F FHCG+LGH V DC
Subjt:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDC

TrEMBL top hitse value%identityAlignment
A0A1Z5S941 CCHC-type domain-containing protein5.4e-0740.35Show/hide
Query:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDCKATVE
        +K+K D+ + L RG+ ++       CW P++YE LP+F + CG+LGH+ K+C + VE
Subjt:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDCKATVE

A0A6J1BSZ1 uncharacterized protein LOC1110054811.5e-1255.77Show/hide
Query:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDC
        V++++DV + L RG+K+ LDG  G CW+P+QYE+LPDF +HCG L H++KDC
Subjt:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDC

A0A6J1DU55 uncharacterized protein LOC1110231357.3e-1251.85Show/hide
Query:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDCKA
        +++  D+T+ LRRG+KI +DG  G CW+P+QYE+LPDF + CG++GH   DC A
Subjt:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDCKA

A0A6J1DX30 uncharacterized protein LOC1110248748.4e-0852.27Show/hide
Query:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGI
        V++  D+++ LRRG+K+ LDG  G  W+P+QYE+LPDF +HCG+
Subjt:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGI

A0A6P4AIH1 uncharacterized protein At4g02000-like3.2e-0755.77Show/hide
Query:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDC
        V+IK D+ + LR GMK+ L G+    WV  QYEKL DF F CG+LGH  KDC
Subjt:  VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCAAGATAAAATACGATGTTACACAACTGCTAAGAAGGGGTATGAAGATTAAGTTGGATGGTGAAAGTGGTAGCTGCTGGGTTCCAATGCAATATGAGAAACTCCCAGA
TTTTTACTTTCATTGTGGAATCTTAGGACACCTGGTCAAAGACTGTAAAGCGACAGTTGAA
mRNA sequenceShow/hide mRNA sequence
GTCAAGATAAAATACGATGTTACACAACTGCTAAGAAGGGGTATGAAGATTAAGTTGGATGGTGAAAGTGGTAGCTGCTGGGTTCCAATGCAATATGAGAAACTCCCAGA
TTTTTACTTTCATTGTGGAATCTTAGGACACCTGGTCAAAGACTGTAAAGCGACAGTTGAA
Protein sequenceShow/hide protein sequence
VKIKYDVTQLLRRGMKIKLDGESGSCWVPMQYEKLPDFYFHCGILGHLVKDCKATVE