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MS015954 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015954
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold582:123164..123427
RNA-Seq ExpressionMS015954
SyntenyMS015954
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU41525.1 hypothetical protein TSUD_140560 [Trifolium subterraneum]1.5e-1347.62Show/hide
Query:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVD
        L+ N+FLFRF   KD D VL++GPWSFD+ LLIL +     +PS L    V+FW++  DLP    S+ +A +LGN +G  E+VD
Subjt:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVD

PQQ12378.1 hypothetical protein Pyn_32588 [Prunus yedoensis var. nudiflora]1.9e-1345.45Show/hide
Query:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVDYDQE
        L  N+FLF F    D +RVL++GPW+FDKAL++L +P   + PSR+  KF  FW+Q  ++PL  M+     ++GN +GEC DV   QE
Subjt:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVDYDQE

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]2.0e-1550.62Show/hide
Query:  NIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVD
        NIFLF F  + D +R+L+ GPW+FD+AL+I+  P  + KP  + F+ VS W+ F DL L  M+K +ATRLGNA+G  EDV+
Subjt:  NIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVD

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]3.5e-1546.59Show/hide
Query:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVDYDQE
        +  N+FLF F    D +RV+K+GPW FDKAL++L KP      S L+F  V+FWI   DLP+ +++K +A RLGNA+G   DVD +++
Subjt:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVDYDQE

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.1e-1344.19Show/hide
Query:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVDYD
        L  N+FLF F  A D +++ KSGPW+FD+ L+++ KP  ++ PS L F  +  W++F DLPL  +++ +A RLGNA+G  E+ D D
Subjt:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVDYD

TrEMBL top hitse value%identityAlignment
A0A2Z6NZV1 Uncharacterized protein7.1e-1447.62Show/hide
Query:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVD
        L+ N+FLFRF   KD D VL++GPWSFD+ LLIL +     +PS L    V+FW++  DLP    S+ +A +LGN +G  E+VD
Subjt:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVD

A0A314Z5A5 DUF4283 domain-containing protein9.3e-1445.45Show/hide
Query:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVDYDQE
        L  N+FLF F    D +RVL++GPW+FDKAL++L +P   + PSR+  KF  FW+Q  ++PL  M+     ++GN +GEC DV   QE
Subjt:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVDYDQE

A0A6J1BSZ1 uncharacterized protein LOC1110054819.9e-1650.62Show/hide
Query:  NIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVD
        NIFLF F  + D +R+L+ GPW+FD+AL+I+  P  + KP  + F+ VS W+ F DL L  M+K +ATRLGNA+G  EDV+
Subjt:  NIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVD

A0A6J1DU55 uncharacterized protein LOC1110231351.7e-1546.59Show/hide
Query:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVDYDQE
        +  N+FLF F    D +RV+K+GPW FDKAL++L KP      S L+F  V+FWI   DLP+ +++K +A RLGNA+G   DVD +++
Subjt:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVDYDQE

A0A6J1DX30 uncharacterized protein LOC1110248745.4e-1444.19Show/hide
Query:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVDYD
        L  N+FLF F  A D +++ KSGPW+FD+ L+++ KP  ++ PS L F  +  W++F DLPL  +++ +A RLGNA+G  E+ D D
Subjt:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVDYD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G31430.1 unknown protein6.8e-0927.27Show/hide
Query:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVDYDQE
        ++   F F F L +  + VL+ GPW+F+  +++L    +  +P    F F+ FW+Q   +P  ++++ +   +G A+G+  D D++ E
Subjt:  LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVDYDQE

AT3G42140.1 zinc ion binding;nucleic acid binding2.7e-0528.17Show/hide
Query:  FRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVG
        F F+  +    +L+ GPWSF+  + ++ +  ++   S  +FK + FWIQ   +PL +++  + T +G  +G
Subjt:  FRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTGACAATAACATATTTTTGTTTCGTTTTGAGCTTGCTAAGGATTGTGACAGAGTCCTTAAGTCAGGGCCATGGTCTTTTGACAAAGCTTTACTGATCCTTCTTAAACC
CCCGAGAATGATGAAGCCATCAAGGTTGAAGTTTAAGTTTGTGTCCTTTTGGATTCAATTTTTGGATCTCCCATTGGACTATATGAGCAAGGTGTTGGCAACACGTCTGG
GTAATGCTGTGGGAGAATGTGAAGACGTGGACTATGATCAAGAA
mRNA sequenceShow/hide mRNA sequence
CTTGACAATAACATATTTTTGTTTCGTTTTGAGCTTGCTAAGGATTGTGACAGAGTCCTTAAGTCAGGGCCATGGTCTTTTGACAAAGCTTTACTGATCCTTCTTAAACC
CCCGAGAATGATGAAGCCATCAAGGTTGAAGTTTAAGTTTGTGTCCTTTTGGATTCAATTTTTGGATCTCCCATTGGACTATATGAGCAAGGTGTTGGCAACACGTCTGG
GTAATGCTGTGGGAGAATGTGAAGACGTGGACTATGATCAAGAA
Protein sequenceShow/hide protein sequence
LDNNIFLFRFELAKDCDRVLKSGPWSFDKALLILLKPPRMMKPSRLKFKFVSFWIQFLDLPLDYMSKVLATRLGNAVGECEDVDYDQE