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MS015968 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015968
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionupstream activation factor subunit UAF30
Genome locationscaffold16:26960..28844
RNA-Seq ExpressionMS015968
SyntenyMS015968
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2303829.1 hypothetical protein GH714_023662 [Hevea brasiliensis]5.9e-4389Show/hide
Query:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
        MLPQ+MK  +TDNPKKLANLIDL NLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDP +KNVV CDEKLKSILLGKP+V+LAELPALIKLHFPK PK
Subjt:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
KAF7815886.1 upstream activation factor subunit UAF30-like [Senna tora]3.4e-4391Show/hide
Query:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
        MLPQR+K TITDNPKKLANLIDL NLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDP NKNVV CDEKLKSILLGK +VELAELP LIKLHFPK PK
Subjt:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
XP_016182321.1 upstream activation factor subunit UAF30 [Arachis ipaensis]4.5e-4389Show/hide
Query:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
        MLPQRMK  +TDNPKKLANLIDL NLPS+LR+FVGQSQISRLGCFMRVWSYIKTNNLQDP NKNVV CDEKLK ILLGKP+VELAELPALIKLHFPK PK
Subjt:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
XP_022151284.1 upstream activation factor subunit UAF30 [Momordica charantia]4.2e-49100Show/hide
Query:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
        MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
Subjt:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
XP_038882021.1 upstream activation factor subunit spp27 [Benincasa hispida]4.1e-4493Show/hide
Query:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
        MLP+RMKM ITDNPKKLANLIDL NLPSTLREFVGQSQISRLGCF  VWSYIKTNNLQDP NKNVVICDEKLKSILLGKPKVELAELPALIKLHFPK PK
Subjt:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
TrEMBL top hitse value%identityAlignment
A0A444X9J7 SWIB domain-containing protein2.2e-4389Show/hide
Query:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
        MLPQRMK  +TDNPKKLANLIDL NLPS+LR+FVGQSQISRLGCFMRVWSYIKTNNLQDP NKNVV CDEKLK ILLGKP+VELAELPALIKLHFPK PK
Subjt:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
A0A445B1Y1 SWIB domain-containing protein2.8e-4388Show/hide
Query:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
        MLPQRMK  +TDNPKKLANLIDL NLPS+LR+FVGQSQISRLGCFMRVWSYIKTNNLQDP NKNVV CDEKLK ILLGKP++ELAELPALIKLHFPK PK
Subjt:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
A0A6A6LW15 SWIB domain-containing protein2.8e-4389Show/hide
Query:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
        MLPQ+MK  +TDNPKKLANLIDL NLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDP +KNVV CDEKLKSILLGKP+V+LAELPALIKLHFPK PK
Subjt:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
A0A6J1DCJ8 upstream activation factor subunit UAF302.0e-49100Show/hide
Query:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
        MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
Subjt:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
A0A6J1ELR1 upstream activation factor subunit UAF302.8e-4391Show/hide
Query:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
        MLPQRMK  ITDNPKKLANLIDL NLPSTLREFVGQSQISRLGCF  VWSYIKTNNLQDP NKNVVICDEKLKSILLGK K+ELAELPALIKLHFPK PK
Subjt:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp271.9e-0746Show/hide
Query:  LPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSI
        L   L EF+G  Q+SR     ++W YIK ++LQDP +K  ++CD+KLKS+
Subjt:  LPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSI
Q05024 Protein TRI18.6e-0527.78Show/hide
Query:  RMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLH
        + K    D+P   +  +    L + L++F+G  ++ R      +W YIK ++LQ+P ++  ++CDEK++ I  GK K+ +  +  L+  H
Subjt:  RMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLH
Q08747 Upstream activation factor subunit UAF302.4e-0729.9Show/hide
Query:  QRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
        ++ K T++ +P     +     L  +L   +G+ +++R     R+W+YIK +NLQ+P NK  ++CDEKL+ ++LGK    + E+  ++  H  +  K
Subjt:  QRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein6.7e-1343.48Show/hide
Query:  LREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKT
        L  F G+ +++R     +VW Y+K +NLQ+P NK  + CD+KLK+I  GK KV + E+  L+  HFPK+
Subjt:  LREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKT
AT2G35605.1 SWIB/MDM2 domain superfamily protein4.7e-1444.93Show/hide
Query:  LREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKT
        L  F+G++++SR     ++W YIK NNLQ+P NK  ++CDE+LK+I  GK  V   E+  L+  HFPK+
Subjt:  LREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKT
AT4G26810.1 SWIB/MDM2 domain superfamily protein1.1e-4486Show/hide
Query:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
        MLPQR+K  ITDNPKKL NLIDL NLPSTLR FVGQSQISRLGCFMRVWSYIKTNNLQDP NKNVVICDEKLKSILLGK +VEL +LP+LIKLHFPK  K
Subjt:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
AT4G26810.2 SWIB/MDM2 domain superfamily protein1.1e-4486Show/hide
Query:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
        MLPQR+K  ITDNPKKL NLIDL NLPSTLR FVGQSQISRLGCFMRVWSYIKTNNLQDP NKNVVICDEKLKSILLGK +VEL +LP+LIKLHFPK  K
Subjt:  MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK
AT4G34290.1 SWIB/MDM2 domain superfamily protein2.2e-1145.45Show/hide
Query:  LREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHF
        +++ VG  +I R     R+W+YIK ++LQDP NK  ++CDEKLK I  GK +V   E+  LI  HF
Subjt:  LREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCCACAGCGGATGAAGATGACCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTTTTCAACCTTCCTTCAACTCTCAGAGAGTTTGTGGGACAGTC
CCAAATTTCTCGCCTGGGCTGTTTCATGCGTGTGTGGTCTTACATCAAAACCAACAATCTGCAGGATCCGGGCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGA
GTATATTGCTAGGGAAGCCCAAGGTTGAGCTTGCCGAACTTCCTGCACTGATTAAATTACATTTTCCCAAAACCCCAAAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGCCACAGCGGATGAAGATGACCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTTTTCAACCTTCCTTCAACTCTCAGAGAGTTTGTGGGACAGTC
CCAAATTTCTCGCCTGGGCTGTTTCATGCGTGTGTGGTCTTACATCAAAACCAACAATCTGCAGGATCCGGGCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGA
GTATATTGCTAGGGAAGCCCAAGGTTGAGCTTGCCGAACTTCCTGCACTGATTAAATTACATTTTCCCAAAACCCCAAAG
Protein sequenceShow/hide protein sequence
MLPQRMKMTITDNPKKLANLIDLFNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPGNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKTPK