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MS015971 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015971
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold16:50394..50534
RNA-Seq ExpressionMS015971
SyntenyMS015971
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AGV40487.1 hypothetical protein [Phaseolus vulgaris]1.9e-0448.94Show/hide
Query:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDR-CCVLCRLSEE
        W++K  PK+ I+ W+++ D LPT  NL++ G++ D   CVLCRLSEE
Subjt:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDR-CCVLCRLSEE
KGN63144.1 hypothetical protein Csa_022313 [Cucumis sativus]5.6e-0450Show/hide
Query:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDRCCVLCRLSEE
        WR +V PK+K+S WK   + LPT SN+ K GI T+  C+ CR S E
Subjt:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDRCCVLCRLSEE
PNX71533.1 ribonuclease H [Trifolium pratense]9.6e-0454.35Show/hide
Query:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDRCCVLCRLSEE
        WR  V  KIK   W++ K+ILPT+SNL K GIT D  C LC   EE
Subjt:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDRCCVLCRLSEE
XP_021838610.1 ABC transporter G family member 39-like [Spinacia oleracea]9.6e-0453.66Show/hide
Query:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDRCCVLC
        W++ + PK K  CWKI+  ILPTK NL K G+TTD  C  C
Subjt:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDRCCVLC
TrEMBL top hitse value%identityAlignment
A0A0A0LQ43 zf-RVT domain-containing protein2.7e-0450Show/hide
Query:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDRCCVLCRLSEE
        WR +V PK+K+S WK   + LPT SN+ K GI T+  C+ CR S E
Subjt:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDRCCVLCRLSEE
A0A2K3KZ31 Ribonuclease H4.6e-0454.35Show/hide
Query:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDRCCVLCRLSEE
        WR  V  KIK   W++ K+ILPT+SNL K GIT D  C LC   EE
Subjt:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDRCCVLCRLSEE
A0A484M6U9 zf-RVT domain-containing protein7.9e-0447.83Show/hide
Query:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDRCCVLC-RLSE
        WR+ VAPK+K+  W+ ++ ILPT S L   G+  D CC +C +LSE
Subjt:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDRCCVLC-RLSE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G26855.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.8e-0435.71Show/hide
Query:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDRCCVLCR
        W +K++PKIK+  WK + + LP  + L+   I+ +  C  CR
Subjt:  WRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDRCCVLCR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTGGAGAGTAAAAGTGGCCCCTAAAATTAAAATATCCTGCTGGAAAATTGTCAAAGATATTCTTCCTACAAAATCTAATCTTGTTAAGATGGGGATAACTACTGACAG
GTGTTGTGTTCTTTGCAGGCTTTCAGAAGAG
mRNA sequenceShow/hide mRNA sequence
TTTTGGAGAGTAAAAGTGGCCCCTAAAATTAAAATATCCTGCTGGAAAATTGTCAAAGATATTCTTCCTACAAAATCTAATCTTGTTAAGATGGGGATAACTACTGACAG
GTGTTGTGTTCTTTGCAGGCTTTCAGAAGAG
Protein sequenceShow/hide protein sequence
FWRVKVAPKIKISCWKIVKDILPTKSNLVKMGITTDRCCVLCRLSEE