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MS015975 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015975
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibosomal protein S12
Genome locationscaffold16:62179..62373
RNA-Seq ExpressionMS015975
SyntenyMS015975
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAK92224.2 ribosomal protein S12 [Pisum sativum]9.5e-1889.09Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        R D TRASDQCPQKQGVRPRVS RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

QWX88123.1 ribosomal protein S12 [Indigofera tinctoria]9.5e-1889.09Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        R D TRASDQCPQKQGVRPRVS RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

YP_002608203.1 ribosomal protein S12 [Carica papaya]9.5e-1889.09Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        R D TRASDQCPQKQGVRPRVS RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

YP_009498134.1 ribosomal protein S12 [Senna tora]9.5e-1889.09Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        R D TRASDQCPQKQGVRPRVS RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

YP_009565395.1 ribosomal protein S12 [Morus notabilis]1.9e-1890.91Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        RRD TRASDQCPQKQGVRPRVS RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

TrEMBL top hitse value%identityAlignment
A0A0M4RVQ0 Ribosomal protein S124.6e-1889.09Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        R D TRASDQCPQKQGVRPRVS RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

A0A411GRT7 Ribosomal protein S129.2e-1990.91Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        RRD TRASDQCPQKQGVRPRVS RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

A0A6C0M8Z1 Ribosomal protein S124.6e-1889.09Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        R D TRASDQCPQKQGVRPRVS RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

A0A6C0M9Y2 Ribosomal protein S124.6e-1889.09Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        R D TRASDQCPQKQGVRPRVS RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

Q9XPB3 Rps124.6e-1889.09Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        R D TRASDQCPQKQGVRPRVS RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

SwissProt top hitse value%identityAlignment
P27070 Ribosomal protein S12, mitochondrial4.0e-1983.64Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        R D TRASDQCPQKQGVRPRV  RTPKKPNS P KIAKVRL+NRHDIF HI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

P60096 Ribosomal protein S12, mitochondrial4.7e-2087.27Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        R D TRASDQCPQKQGVRPRV  RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

P60097 Ribosomal protein S12, mitochondrial4.7e-2087.27Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        R D TRASDQCPQKQGVRPRV  RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

P68535 Ribosomal protein S12, mitochondrial5.2e-1985.45Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        R D TRA DQCPQKQGV PRVS RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

Q95869 Ribosomal protein S12, mitochondrial5.2e-1985.45Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        R D TRA DQCPQKQGV PRVS RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein5.3e-1981.82Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        R D TRA D+CPQK GV PRVS RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

ATCG00065.1 ribosomal protein S12A2.0e-0551.11Show/hide
Query:  CPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        CPQ++G   RV   TPKKPNS   K+A+VRL++  +I A+I G G
Subjt:  CPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

ATCG00905.1 ribosomal protein S12C2.0e-0551.11Show/hide
Query:  CPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        CPQ++G   RV   TPKKPNS   K+A+VRL++  +I A+I G G
Subjt:  CPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

ATCG01230.1 ribosomal protein S12B2.0e-0551.11Show/hide
Query:  CPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        CPQ++G   RV   TPKKPNS   K+A+VRL++  +I A+I G G
Subjt:  CPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG

ATMG00980.1 Ribosomal protein S12/S23 family protein5.3e-1981.82Show/hide
Query:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG
        R D TRA D+CPQK GV PRVS RTPKKPNS P KIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTCCTACCTATATTCATAGCATGACAAACAGGAGGGATCATACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTGTTTCAAGGAGAACACCAAA
AAAACCTAATTCAACTCCACATAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTTCGGGCGAAGGT
mRNA sequenceShow/hide mRNA sequence
TTTCCTACCTATATTCATAGCATGACAAACAGGAGGGATCATACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTGTTTCAAGGAGAACACCAAA
AAAACCTAATTCAACTCCACATAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTTCGGGCGAAGGT
Protein sequenceShow/hide protein sequence
FPTYIHSMTNRRDHTRASDQCPQKQGVRPRVSRRTPKKPNSTPHKIAKVRLSNRHDIFAHISGEG