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MS015980 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015980
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein FAR1-RELATED SEQUENCE
Genome locationscaffold16:205853..206122
RNA-Seq ExpressionMS015980
SyntenyMS015980
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type
IPR031052 - FHY3/FAR1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TQD95458.1 hypothetical protein C1H46_018943 [Malus baccata]3.2e-2465.56Show/hide
Query:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        Y+ ++F+LF+KEYM ILNC++YKIGK   TSEYKVS+   S   LV+Y +STQ V CSCMKFTF+GILCSHALK LDKKNVK IP  Y++
Subjt:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI

XP_009350482.1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2 [Pyrus x bretschneideri]4.2e-2465.56Show/hide
Query:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        Y+ ++F+LF+KEYM ILNC++YKIGK   TSEYKVS+   S   LV+Y  STQ V CSCMKFTF+GILCSHALK LDKKNVK IP  Y++
Subjt:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI

XP_021818769.1 protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Prunus avium]2.5e-2463.33Show/hide
Query:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        Y+ ++F+LF+KEYM IL+C++YK+GK   T EY+VS+   S   LV+Y  STQ VTCSCMKFTF+GILCSHALK LDKKNVKRIP  Y++
Subjt:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI

XP_021818770.1 protein FAR1-RELATED SEQUENCE 5-like isoform X2 [Prunus avium]2.5e-2463.33Show/hide
Query:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        Y+ ++F+LF+KEYM IL+C++YK+GK   T EY+VS+   S   LV+Y  STQ VTCSCMKFTF+GILCSHALK LDKKNVKRIP  Y++
Subjt:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI

XP_031741897.1 protein FAR1-RELATED SEQUENCE 5 isoform X1 [Cucumis sativus]3.4e-2664.44Show/hide
Query:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        Y+  +FKLF+KEYM+IL+C+ +K+GKF+  SEYKV F  +S HWLV+Y ASTQTVTCSCMKFT  GILCSH+LK LD+KNVK++P +Y++
Subjt:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI

TrEMBL top hitse value%identityAlignment
A0A0A0KLA3 Protein FAR1-RELATED SEQUENCE1.7e-2664.44Show/hide
Query:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        Y+  +FKLF+KEYM+IL+C+ +K+GKF+  SEYKV F  +S HWLV+Y ASTQTVTCSCMKFT  GILCSH+LK LD+KNVK++P +Y++
Subjt:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI

A0A540M9T8 Protein FAR1-RELATED SEQUENCE1.6e-2465.56Show/hide
Query:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        Y+ ++F+LF+KEYM ILNC++YKIGK   TSEYKVS+   S   LV+Y +STQ V CSCMKFTF+GILCSHALK LDKKNVK IP  Y++
Subjt:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI

A0A5N5G7W4 Protein FAR1-RELATED SEQUENCE2.0e-2465.56Show/hide
Query:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        Y+ ++F+LF+KEYM ILNC++YKIGK   TSEYKVS+   S   LV+Y  STQ V CSCMKFTF+GILCSHALK LDKKNVK IP  Y++
Subjt:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI

A0A6P5SPE9 Protein FAR1-RELATED SEQUENCE1.2e-2463.33Show/hide
Query:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        Y+ ++F+LF+KEYM IL+C++YK+GK   T EY+VS+   S   LV+Y  STQ VTCSCMKFTF+GILCSHALK LDKKNVKRIP  Y++
Subjt:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI

A0A6P5SRI4 Protein FAR1-RELATED SEQUENCE1.2e-2463.33Show/hide
Query:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        Y+ ++F+LF+KEYM IL+C++YK+GK   T EY+VS+   S   LV+Y  STQ VTCSCMKFTF+GILCSHALK LDKKNVKRIP  Y++
Subjt:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI

SwissProt top hitse value%identityAlignment
Q3EBQ3 Protein FAR1-RELATED SEQUENCE 25.0e-0425.56Show/hide
Query:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        Y+   FK F+ E   +++C + K  +   T+ +++       ++ V          CSC  F + G LC HA+  L   +V R+P+ Y++
Subjt:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI

Arabidopsis top hitse value%identityAlignment
AT2G32250.1 FAR1-related sequence 23.6e-0525.56Show/hide
Query:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        Y+   FK F+ E   +++C + K  +   T+ +++       ++ V          CSC  F + G LC HA+  L   +V R+P+ Y++
Subjt:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI

AT2G32250.2 FAR1-related sequence 23.6e-0525.56Show/hide
Query:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        Y+   FK F+ E   +++C + K  +   T+ +++       ++ V          CSC  F + G LC HA+  L   +V R+P+ Y++
Subjt:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI

AT2G32250.3 FAR1-related sequence 23.6e-0525.56Show/hide
Query:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        Y+   FK F+ E   +++C + K  +   T+ +++       ++ V          CSC  F + G LC HA+  L   +V R+P+ Y++
Subjt:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI

AT2G32250.4 FAR1-related sequence 23.6e-0525.56Show/hide
Query:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        Y+   FK F+ E   +++C + K  +   T+ +++       ++ V          CSC  F + G LC HA+  L   +V R+P+ Y++
Subjt:  YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI

AT3G06250.1 FAR1-related sequence 75.2e-0433.33Show/hide
Query:  VRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI
        V + AS    +CSC  F + G+LC H LK  +  +++ +P+ Y++
Subjt:  VRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATTCATATCAGATGTTTAAATTGTTTAAAAAAGAGTATATGGATATTCTTAATTGTAATATCTACAAAATTGGTAAGTTTAATGATACATCAGAGTATAAAGTATCATT
TCCTGTAACATCTTTTCATTGGTTGGTTAGATACTATGCTTCGACTCAAACAGTCACTTGTAGTTGCATGAAGTTCACTTTCATTGGTATTTTATGCAGTCATGCGCTTA
AGGCGCTTGATAAGAAAAATGTGAAAAGAATTCCTACAACATATATGATA
mRNA sequenceShow/hide mRNA sequence
TATTCATATCAGATGTTTAAATTGTTTAAAAAAGAGTATATGGATATTCTTAATTGTAATATCTACAAAATTGGTAAGTTTAATGATACATCAGAGTATAAAGTATCATT
TCCTGTAACATCTTTTCATTGGTTGGTTAGATACTATGCTTCGACTCAAACAGTCACTTGTAGTTGCATGAAGTTCACTTTCATTGGTATTTTATGCAGTCATGCGCTTA
AGGCGCTTGATAAGAAAAATGTGAAAAGAATTCCTACAACATATATGATA
Protein sequenceShow/hide protein sequence
YSYQMFKLFKKEYMDILNCNIYKIGKFNDTSEYKVSFPVTSFHWLVRYYASTQTVTCSCMKFTFIGILCSHALKALDKKNVKRIPTTYMI