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MS015981 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015981
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein FAR1-RELATED SEQUENCE
Genome locationscaffold16:215692..216027
RNA-Seq ExpressionMS015981
SyntenyMS015981
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR004330 - FAR1 DNA binding domain
IPR031052 - FHY3/FAR1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034066.1 nicotinamidase 2-like isoform X2 [Cucumis melo var. makuwa]8.1e-2554.7Show/hide
Query:  INTQLEVVEPVVGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGK-----T
        I+ QLE+VEPV+GMKFS VE+ Y+ YVN    VGF   KQ Y +KKK   +SR  FCCSKE F +V+KR+E   Y  PI RTGC+A + CLLGK      
Subjt:  INTQLEVVEPVVGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGK-----T

Query:  MSFNRNHNHDLVRTPMK
        +SF  NHNHDL +  MK
Subjt:  MSFNRNHNHDLVRTPMK

XP_016900280.1 PREDICTED: uncharacterized protein LOC103488764 isoform X1 [Cucumis melo]8.1e-2554.7Show/hide
Query:  INTQLEVVEPVVGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGK-----T
        I+ QLE+VEPV+GMKFS VE+ Y+ YVN    VGF   KQ Y +KKK   +SR  FCCSKE F +V+KR+E   Y  PI RTGC+A + CLLGK      
Subjt:  INTQLEVVEPVVGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGK-----T

Query:  MSFNRNHNHDLVRTPMK
        +SF  NHNHDL +  MK
Subjt:  MSFNRNHNHDLVRTPMK

XP_021818769.1 protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Prunus avium]2.8e-1747.79Show/hide
Query:  EVVEPV-VGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGKT-----MSFN
        E+ E + +G +FS  E AY  YV  GG  GFN  KQH  +  K   ++R  +CCSKE   R DKRRES SY+ PI R GC+A + C L K      +SFN
Subjt:  EVVEPV-VGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGKT-----MSFN

Query:  RNHNHDLVRTPMK
         +HNHDL++ PMK
Subjt:  RNHNHDLVRTPMK

XP_021818770.1 protein FAR1-RELATED SEQUENCE 5-like isoform X2 [Prunus avium]2.8e-1747.79Show/hide
Query:  EVVEPV-VGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGKT-----MSFN
        E+ E + +G +FS  E AY  YV  GG  GFN  KQH  +  K   ++R  +CCSKE   R DKRRES SY+ PI R GC+A + C L K      +SFN
Subjt:  EVVEPV-VGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGKT-----MSFN

Query:  RNHNHDLVRTPMK
         +HNHDL++ PMK
Subjt:  RNHNHDLVRTPMK

XP_031741897.1 protein FAR1-RELATED SEQUENCE 5 isoform X1 [Cucumis sativus]6.8e-2452.99Show/hide
Query:  INTQLEVVEPVVGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGK-----T
        I+ QLE+VEPV+GMKF  VE+ Y+ YVN    VGF   KQ Y +KKK   +SR  FCCSKE F +V+KR+E   Y  PI RTGC+A + CLLGK      
Subjt:  INTQLEVVEPVVGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGK-----T

Query:  MSFNRNHNHDLVRTPMK
        +SF  NHNHDL +  +K
Subjt:  MSFNRNHNHDLVRTPMK

TrEMBL top hitse value%identityAlignment
A0A0A0KLA3 Protein FAR1-RELATED SEQUENCE3.3e-2452.99Show/hide
Query:  INTQLEVVEPVVGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGK-----T
        I+ QLE+VEPV+GMKF  VE+ Y+ YVN    VGF   KQ Y +KKK   +SR  FCCSKE F +V+KR+E   Y  PI RTGC+A + CLLGK      
Subjt:  INTQLEVVEPVVGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGK-----T

Query:  MSFNRNHNHDLVRTPMK
        +SF  NHNHDL +  +K
Subjt:  MSFNRNHNHDLVRTPMK

A0A1S4DX27 uncharacterized protein LOC103488764 isoform X13.9e-2554.7Show/hide
Query:  INTQLEVVEPVVGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGK-----T
        I+ QLE+VEPV+GMKFS VE+ Y+ YVN    VGF   KQ Y +KKK   +SR  FCCSKE F +V+KR+E   Y  PI RTGC+A + CLLGK      
Subjt:  INTQLEVVEPVVGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGK-----T

Query:  MSFNRNHNHDLVRTPMK
        +SF  NHNHDL +  MK
Subjt:  MSFNRNHNHDLVRTPMK

A0A5A7SVW7 Protein FAR1-RELATED SEQUENCE3.9e-2554.7Show/hide
Query:  INTQLEVVEPVVGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGK-----T
        I+ QLE+VEPV+GMKFS VE+ Y+ YVN    VGF   KQ Y +KKK   +SR  FCCSKE F +V+KR+E   Y  PI RTGC+A + CLLGK      
Subjt:  INTQLEVVEPVVGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGK-----T

Query:  MSFNRNHNHDLVRTPMK
        +SF  NHNHDL +  MK
Subjt:  MSFNRNHNHDLVRTPMK

A0A6P5SPE9 Protein FAR1-RELATED SEQUENCE1.3e-1747.79Show/hide
Query:  EVVEPV-VGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGKT-----MSFN
        E+ E + +G +FS  E AY  YV  GG  GFN  KQH  +  K   ++R  +CCSKE   R DKRRES SY+ PI R GC+A + C L K      +SFN
Subjt:  EVVEPV-VGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGKT-----MSFN

Query:  RNHNHDLVRTPMK
         +HNHDL++ PMK
Subjt:  RNHNHDLVRTPMK

A0A6P5SRI4 Protein FAR1-RELATED SEQUENCE1.3e-1747.79Show/hide
Query:  EVVEPV-VGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGKT-----MSFN
        E+ E + +G +FS  E AY  YV  GG  GFN  KQH  +  K   ++R  +CCSKE   R DKRRES SY+ PI R GC+A + C L K      +SFN
Subjt:  EVVEPV-VGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGKT-----MSFN

Query:  RNHNHDLVRTPMK
         +HNHDL++ PMK
Subjt:  RNHNHDLVRTPMK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G07500.1 Far-red impaired responsive (FAR1) family protein5.2e-0631.13Show/hide
Query:  VVEPVVGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGKT-----MSFNRN
        +VEP +GM+F   E A   Y N    +GF      + R  +   +      C+KE F R   RR  +     I R GCKA I     K+       F + 
Subjt:  VVEPVVGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGKT-----MSFNRN

Query:  HNHDLV
        HNH L+
Subjt:  HNHDLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATCAATACTCAACTTGAAGTTGTAGAGCCAGTTGTTGGAATGAAGTTTAGTTTGGTGGAGGATGCATATAAGATTTATGTCAATGATGGAGGAAATGTTGGTTTTAATGA
ATGGAAACAACATTATAGTAGGAAAAAAAAATATAAAGAGATTTCAAGGACAATTTTTTGTTGCTCAAAAGAATGGTTTCACCGAGTAGACAAGCGAAGAGAAAGTACTT
CATATGCTCCACCAATTTTCAGGACTGGATGTAAAGCGCAAATAACATGTTTGCTTGGAAAAACTATGTCTTTTAATAGAAATCACAATCATGACCTTGTTAGAACACCA
ATGAAA
mRNA sequenceShow/hide mRNA sequence
ATCAATACTCAACTTGAAGTTGTAGAGCCAGTTGTTGGAATGAAGTTTAGTTTGGTGGAGGATGCATATAAGATTTATGTCAATGATGGAGGAAATGTTGGTTTTAATGA
ATGGAAACAACATTATAGTAGGAAAAAAAAATATAAAGAGATTTCAAGGACAATTTTTTGTTGCTCAAAAGAATGGTTTCACCGAGTAGACAAGCGAAGAGAAAGTACTT
CATATGCTCCACCAATTTTCAGGACTGGATGTAAAGCGCAAATAACATGTTTGCTTGGAAAAACTATGTCTTTTAATAGAAATCACAATCATGACCTTGTTAGAACACCA
ATGAAA
Protein sequenceShow/hide protein sequence
INTQLEVVEPVVGMKFSLVEDAYKIYVNDGGNVGFNEWKQHYSRKKKYKEISRTIFCCSKEWFHRVDKRRESTSYAPPIFRTGCKAQITCLLGKTMSFNRNHNHDLVRTP
MK