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MS015982 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015982
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold16:234566..234799
RNA-Seq ExpressionMS015982
SyntenyMS015982
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5443021.1 hypothetical protein F2P56_035618 [Juglans regia]1.1e-1550.68Show/hide
Query:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHI
        +G  +G+   VD+D+ G CWG  L +RV++++TKPL RG  L +G+  Y  WIP  YE+LPNFCY CGK+KH+
Subjt:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHI

KAF5443024.1 hypothetical protein F2P56_035621 [Juglans regia]1.1e-1550.68Show/hide
Query:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHI
        +G  +G+   VD+D+ G CWG  L +RV++++TKPL RG  L +G+  Y  WIP  YE+LPNFCY CGK+KH+
Subjt:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHI

KAF5458622.1 hypothetical protein F2P56_022639, partial [Juglans regia]8.1e-1650.68Show/hide
Query:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHI
        +G  +G+   VD+D+ G CWG  L +RV++++TKPL RG +L +G+  Y  WIP  YE+LPNFCY CGK+KH+
Subjt:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHI

XP_018813590.2 uncharacterized protein LOC108985667 [Juglans regia]1.1e-1550.68Show/hide
Query:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHI
        +G  +G+   VD+D+ G CWG  L +RV++++TKPL RG  L +G+  Y  WIP  YE+LPNFCY CGK+KH+
Subjt:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHI

XP_035542094.1 uncharacterized protein LOC118344802 [Juglans regia]1.1e-1550.68Show/hide
Query:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHI
        +G  +G+   VD+D+ G CWG  L +RV++++TKPL RG  L +G+  Y  WIP  YE+LPNFCY CGK+KH+
Subjt:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHI

TrEMBL top hitse value%identityAlignment
A0A2I4E2H1 uncharacterized protein LOC1089856675.1e-1650.68Show/hide
Query:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHI
        +G  +G+   VD+D+ G CWG  L +RV++++TKPL RG  L +G+  Y  WIP  YE+LPNFCY CGK+KH+
Subjt:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHI

A0A6J1DU55 uncharacterized protein LOC1110231352.0e-1550Show/hide
Query:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHIAKD
        +GN +G F  VD +E G  WG SL +RV+++ITKPLRRG+ + I       WIPI YE+LP+FCY CG + H + D
Subjt:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHIAKD

A0A6P9E3M1 uncharacterized protein LOC1183448025.1e-1650.68Show/hide
Query:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHI
        +G  +G+   VD+D+ G CWG  L +RV++++TKPL RG  L +G+  Y  WIP  YE+LPNFCY CGK+KH+
Subjt:  IGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHI

W9RBJ0 CCHC-type domain-containing protein1.1e-1549.32Show/hide
Query:  VIGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKH
        ++G+++G    V  D+ G+CWG+ + VRVVL+ITKP+RR V + +G   Y  W  + YEKLP+FCYGCGK  H
Subjt:  VIGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKH

W9RRS1 CCHC-type domain-containing protein1.1e-1549.32Show/hide
Query:  VIGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKH
        ++G+++G    V  D+ G+CWG+ + VRVVL+ITKP+RR V + +G   Y  W  + YEKLP+FCYGCGK  H
Subjt:  VIGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCATTGGAAATTTGGTTGGAAAATTCGAAAAGGTTGATAGTGATGAAGATGGACAATGTTGGGGGGAGAGTCTTCATGTTAGAGTTGTGCTTAATATCACAAAACC
TTTGCGAAGAGGAGTACTTTTAAAGATTGGATCTATGACCTATGAAAAATGGATTCCCATTTCGTATGAAAAGTTGCCCAACTTTTGCTATGGCTGTGGGAAGCTCAAGC
ATATTGCCAAAGAC
mRNA sequenceShow/hide mRNA sequence
ATGGTCATTGGAAATTTGGTTGGAAAATTCGAAAAGGTTGATAGTGATGAAGATGGACAATGTTGGGGGGAGAGTCTTCATGTTAGAGTTGTGCTTAATATCACAAAACC
TTTGCGAAGAGGAGTACTTTTAAAGATTGGATCTATGACCTATGAAAAATGGATTCCCATTTCGTATGAAAAGTTGCCCAACTTTTGCTATGGCTGTGGGAAGCTCAAGC
ATATTGCCAAAGAC
Protein sequenceShow/hide protein sequence
MVIGNLVGKFEKVDSDEDGQCWGESLHVRVVLNITKPLRRGVLLKIGSMTYEKWIPISYEKLPNFCYGCGKLKHIAKD