; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015994 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015994
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationscaffold16:535069..535309
RNA-Seq ExpressionMS015994
SyntenyMS015994
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]2.0e-1455.56Show/hide
Query:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS
        + ESSNTKK +A KEVREK +SI+CWKC+G GH SK+C+NK+ M ++N +++  D CE++D Q EEEY+   DDE+I+E S
Subjt:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS

TYK08101.1 uncharacterized protein E5676_scaffold265G002620 [Cucumis melo var. makuwa]2.0e-1455.56Show/hide
Query:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS
        + ESSNTKK +A KEVREK +SI+CWKC+G GH SK+C+NK+ M ++N +++  D CE++D Q EEEY+   DDE+I+E S
Subjt:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]2.0e-1455.56Show/hide
Query:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS
        + ESSNTKK +A KEVREK +SI+CWKC+G GH SK+C+NK+ M ++N +++  D CE++D Q EEEY+   DDE+I+E S
Subjt:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]2.0e-1455.56Show/hide
Query:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS
        + ESSNTKK +A KEVREK +SI+CWKC+G GH SK+C+NK+ M ++N +++  D CE++D Q EEEY+   DDE+I+E S
Subjt:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS

XP_022153198.1 uncharacterized protein LOC111020753 [Momordica charantia]9.1e-1559.21Show/hide
Query:  ESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKACDDEFIKE
        ESSNTK+N+APKEVREK +SI+CWKC+G GH SK+CVNK+ M I+N +++ +D CE+HD +FEE     D+E+I+E
Subjt:  ESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKACDDEFIKE

TrEMBL top hitse value%identityAlignment
A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein9.8e-1555.56Show/hide
Query:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS
        + ESSNTKK +A KEVREK +SI+CWKC+G GH SK+C+NK+ M ++N +++  D CE++D Q EEEY+   DDE+I+E S
Subjt:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS

A0A5D3C3D3 F15O4.139.8e-1555.56Show/hide
Query:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS
        + ESSNTKK +A KEVREK +SI+CWKC+G GH SK+C+NK+ M ++N +++  D CE++D Q EEEY+   DDE+I+E S
Subjt:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS

A0A5D3C8C6 CCHC-type domain-containing protein9.8e-1555.56Show/hide
Query:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS
        + ESSNTKK +A KEVREK +SI+CWKC+G GH SK+C+NK+ M ++N +++  D CE++D Q EEEY+   DDE+I+E S
Subjt:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS

A0A5D3DRJ1 F15O4.139.8e-1555.56Show/hide
Query:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS
        + ESSNTKK +A KEVREK +SI+CWKC+G GH SK+C+NK+ M ++N +++  D CE++D Q EEEY+   DDE+I+E S
Subjt:  DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKA-CDDEFIKEDS

A0A6J1DGU9 uncharacterized protein LOC1110207534.4e-1559.21Show/hide
Query:  ESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKACDDEFIKE
        ESSNTK+N+APKEVREK +SI+CWKC+G GH SK+CVNK+ M I+N +++ +D CE+HD +FEE     D+E+I+E
Subjt:  ESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKK-MEIKNDILELNDVCEKHDTQFEEEYKACDDEFIKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATAGAGAGAGTTCTAATACTAAAAAGAATAAAGCTCCAAAGGAGGTAAGGGAGAAGATTAATTCTATTAAATGTTGGAAGTGCAGAGGATCTGGACACACGAGCAAAGA
ATGTGTCAATAAAAAGATGGAGATAAAAAATGACATACTTGAGTTAAATGATGTTTGTGAGAAACATGATACACAATTTGAGGAAGAATATAAAGCATGTGATGATGAAT
TCATTAAAGAAGATAGC
mRNA sequenceShow/hide mRNA sequence
GATAGAGAGAGTTCTAATACTAAAAAGAATAAAGCTCCAAAGGAGGTAAGGGAGAAGATTAATTCTATTAAATGTTGGAAGTGCAGAGGATCTGGACACACGAGCAAAGA
ATGTGTCAATAAAAAGATGGAGATAAAAAATGACATACTTGAGTTAAATGATGTTTGTGAGAAACATGATACACAATTTGAGGAAGAATATAAAGCATGTGATGATGAAT
TCATTAAAGAAGATAGC
Protein sequenceShow/hide protein sequence
DRESSNTKKNKAPKEVREKINSIKCWKCRGSGHTSKECVNKKMEIKNDILELNDVCEKHDTQFEEEYKACDDEFIKEDS