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MS016013 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016013
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationscaffold114:211625..211911
RNA-Seq ExpressionMS016013
SyntenyMS016013
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR004332 - Transposase, MuDR, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034014.1 uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]9.0e-1747.96Show/hide
Query:  CEHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVKHHL-YEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH
        CE+++PS T  +++++ V++I E D II  M  +N  LY G  C +KE MQH++K F +K H  YEVVEST +K VIRC +  +GCKWRLR  + +SH
Subjt:  CEHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVKHHL-YEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH

KAA0047926.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.8e-1748.98Show/hide
Query:  CEHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVKHHL-YEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH
        CE+++PS T  ++++D V+ I E D II SM  +N  LY G  C +KE +QH++K F +K H  YEVVEST +K VIRC +  +GCKWRLR  + +SH
Subjt:  CEHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVKHHL-YEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH

XP_008456454.1 PREDICTED: uncharacterized protein LOC103496397 [Cucumis melo]1.4e-1748.98Show/hide
Query:  CEHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVKHHL-YEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH
        CE+++PS T  N+++D V+ I E D II  M ++N  LY G  C +KE +QH++K F +K H  YEVVEST +K VIRC +   GCKWRLR  + +SH
Subjt:  CEHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVKHHL-YEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH

XP_022143566.1 uncharacterized protein LOC111013435 [Momordica charantia]6.8e-2562.89Show/hide
Query:  EHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVK-HHLYEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH
        EHDIPS T N+I  DMVN   E DSIIQ +  END+LY+ F CNDKETMQHI+K F ++ HH Y++VES  SK VIRC +WQDGCKWRLR  +N+S+
Subjt:  EHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVK-HHLYEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH

XP_022156564.1 uncharacterized protein LOC111023439 [Momordica charantia]8.9e-2561.86Show/hide
Query:  EHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTV-KHHLYEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH
        EHDI S+T N    DMVN+I E DSI Q +  +N++LY+GFRC+DKETMQHI+K+F V  HH YEV+ES  SK VIRC +WQDGCKWRLR  +N+S+
Subjt:  EHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTV-KHHLYEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH

TrEMBL top hitse value%identityAlignment
A0A1S3C4J7 uncharacterized protein LOC1034963976.7e-1848.98Show/hide
Query:  CEHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVKHHL-YEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH
        CE+++PS T  N+++D V+ I E D II  M ++N  LY G  C +KE +QH++K F +K H  YEVVEST +K VIRC +   GCKWRLR  + +SH
Subjt:  CEHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVKHHL-YEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH

A0A5A7TVX8 Uncharacterized protein4.3e-1746.94Show/hide
Query:  CEHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVKHHL-YEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH
        CE+++PS T  +++I+ ++ I E D II  M  +N  LY+G  C +KE +QH++K F +K H  YEVVEST +K VIRC +  +GCKWRLR  + +SH
Subjt:  CEHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVKHHL-YEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH

A0A5A7U115 Mediator of RNA polymerase II transcription subunit 12-like isoform X18.7e-1848.98Show/hide
Query:  CEHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVKHHL-YEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH
        CE+++PS T  ++++D V+ I E D II SM  +N  LY G  C +KE +QH++K F +K H  YEVVEST +K VIRC +  +GCKWRLR  + +SH
Subjt:  CEHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVKHHL-YEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH

A0A6J1CQN0 uncharacterized protein LOC1110134353.3e-2562.89Show/hide
Query:  EHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVK-HHLYEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH
        EHDIPS T N+I  DMVN   E DSIIQ +  END+LY+ F CNDKETMQHI+K F ++ HH Y++VES  SK VIRC +WQDGCKWRLR  +N+S+
Subjt:  EHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVK-HHLYEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH

A0A6J1DTV0 uncharacterized protein LOC1110234394.3e-2561.86Show/hide
Query:  EHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTV-KHHLYEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH
        EHDI S+T N    DMVN+I E DSI Q +  +N++LY+GFRC+DKETMQHI+K+F V  HH YEV+ES  SK VIRC +WQDGCKWRLR  +N+S+
Subjt:  EHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTV-KHHLYEVVESTSSKCVIRCNEWQDGCKWRLR--VNQSH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGTGAACATGATATCCCTTCAGAAACATTAAATAACATAAACATTGACATGGTTAATAGTATTGTTGAACAGGACTCTATTATTCAATCAATGACTGTTGAAAAT
GATCTATTGTACCAGGGGTTTAGGTGTAACGATAAAGAAACCATGCAACATATTATGAAATATTTTACTGTTAAGCACCACCTTTATGAAGTTGTAGAGTCGACA
TCATCTAAATGCGTAATTAGATGTAACGAGTGGCAAGATGGATGCAAATGGCGACTTCGTGTGAATCAGAGTCAT
mRNA sequenceShow/hide mRNA sequence
TGTGAACATGATATCCCTTCAGAAACATTAAATAACATAAACATTGACATGGTTAATAGTATTGTTGAACAGGACTCTATTATTCAATCAATGACTGTTGAAAAT
GATCTATTGTACCAGGGGTTTAGGTGTAACGATAAAGAAACCATGCAACATATTATGAAATATTTTACTGTTAAGCACCACCTTTATGAAGTTGTAGAGTCGACA
TCATCTAAATGCGTAATTAGATGTAACGAGTGGCAAGATGGATGCAAATGGCGACTTCGTGTGAATCAGAGTCAT
Protein sequenceShow/hide protein sequence
CEHDIPSETLNNINIDMVNSIVEQDSIIQSMTVENDLLYQGFRCNDKETMQHIMKYFTVKHHLYEVVESTSSKCVIRCNEWQDGCKWRLRVNQSH