; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016029 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016029
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold217:149842..150232
RNA-Seq ExpressionMS016029
SyntenyMS016029
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.8e-1946.34Show/hide
Query:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKFE
        SH+LFADDILLF   +   L NL   L  FE +  L +NL K +    N+S     + A  W I + SLPLSYL +PLGGNP+   FW  + E+I++K  
Subjt:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKFE

Query:  SWKFSYISKWGWLTLIQSIFSCL
        +WK++ ISK G LTLI+S  S L
Subjt:  SWKFSYISKWGWLTLIQSIFSCL

KAA0053621.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.8e-1941.46Show/hide
Query:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKFE
        +H+LFADDIL+F   D   + NL   +  FE +  L +N  K S S  N+  D +      W IP    P++Y  +PLGG P+  SFWDPII +I +K  
Subjt:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKFE

Query:  SWKFSYISKWGWLTLIQSIFSCL
        SWK+ +ISK G LTL+++  S +
Subjt:  SWKFSYISKWGWLTLIQSIFSCL

TYK05808.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-1945.74Show/hide
Query:  DFHASHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIR
        D + SH+LFADDILLF   +   L NL   L  FE +  L +NL K +    N+S    L+ A  W I   +LPL+YL +PLGGNP+ + FW  I +RI+
Subjt:  DFHASHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIR

Query:  RKFESWKFSYISKWGWLTLIQSIFSCLHI
        +K  +WK+++ISK G LTLI+S  S L I
Subjt:  RKFESWKFSYISKWGWLTLIQSIFSCLHI

XP_018810157.1 uncharacterized protein LOC108983081 [Juglans regia]5.8e-1950Show/hide
Query:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGF-NISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKF
        SHLLFADD LLF  AD  +L  L  LL  FE + DL +N  K       N+SN    Q A I      SLP++YL +PLG   R  S WDP+IE+I RK 
Subjt:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGF-NISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKF

Query:  ESWKFSYISKWGWLTLIQSIFSCL
        E WK  Y+SK G LTLI+SI S L
Subjt:  ESWKFSYISKWGWLTLIQSIFSCL

XP_028122010.1 uncharacterized protein LOC114319199 [Camellia sinensis]3.4e-1941.6Show/hide
Query:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKFE
        SHL FADD L+F + D  ++ NL  +L  FEL   L +N  K    G  ++ D+  Q A+ ++    SLP++YL MPLG NP+  S W+PII +++++  
Subjt:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKFE

Query:  SWKFSYISKWGWLTLIQSIFSCLHI
        SWK  Y+S  G +TLI+S+ S L I
Subjt:  SWKFSYISKWGWLTLIQSIFSCLHI

TrEMBL top hitse value%identityAlignment
A0A2I4DSN4 uncharacterized protein LOC1089830812.8e-1950Show/hide
Query:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGF-NISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKF
        SHLLFADD LLF  AD  +L  L  LL  FE + DL +N  K       N+SN    Q A I      SLP++YL +PLG   R  S WDP+IE+I RK 
Subjt:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGF-NISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKF

Query:  ESWKFSYISKWGWLTLIQSIFSCL
        E WK  Y+SK G LTLI+SI S L
Subjt:  ESWKFSYISKWGWLTLIQSIFSCL

A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein2.8e-1946.34Show/hide
Query:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKFE
        SH+LFADDILLF   +   L NL   L  FE +  L +NL K +    N+S     + A  W I + SLPLSYL +PLGGNP+   FW  + E+I++K  
Subjt:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKFE

Query:  SWKFSYISKWGWLTLIQSIFSCL
        +WK++ ISK G LTLI+S  S L
Subjt:  SWKFSYISKWGWLTLIQSIFSCL

A0A5A7VIU9 LINE-1 retrotransposable element ORF2 protein3.7e-1947.15Show/hide
Query:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKFE
        SHLLFADD+L+F   +   L NL   L  FE +  L  NL K + S  NIS D   Q A+++   T  LP++YL +PLGGNPR  SFW   IE I +K  
Subjt:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKFE

Query:  SWKFSYISKWGWLTLIQSIFSCL
         WK+S ISK G LTL+++  S L
Subjt:  SWKFSYISKWGWLTLIQSIFSCL

A0A5D3BF47 LINE-1 retrotransposable element ORF2 protein2.8e-1941.46Show/hide
Query:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKFE
        +H+LFADDIL+F   D   + NL   +  FE +  L +N  K S S  N+  D +      W IP    P++Y  +PLGG P+  SFWDPII +I +K  
Subjt:  SHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKFE

Query:  SWKFSYISKWGWLTLIQSIFSCL
        SWK+ +ISK G LTL+++  S +
Subjt:  SWKFSYISKWGWLTLIQSIFSCL

A0A5D3C3M3 LINE-1 retrotransposable element ORF2 protein5.7e-2045.74Show/hide
Query:  DFHASHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIR
        D + SH+LFADDILLF   +   L NL   L  FE +  L +NL K +    N+S    L+ A  W I   +LPL+YL +PLGGNP+ + FW  I +RI+
Subjt:  DFHASHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIR

Query:  RKFESWKFSYISKWGWLTLIQSIFSCLHI
        +K  +WK+++ISK G LTLI+S  S L I
Subjt:  RKFESWKFSYISKWGWLTLIQSIFSCLHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATTTTCATGCATCACACCTTCTGTTCGCTGACGATATTCTTCTATTCTCTAGCGCAGACATTACTAAACTTTGTAATCTTTATGGGCTGTTACAATCCTTTGAGCTTTC
GTTGGATCTCAACATGAATCTGCATAAGCCATCATTTTCTGGTTTTAACATTTCCAACGATTACCTTCTGCAGCGAGCTCAGATTTGGAGTATCCCTACTGTCTCACTTC
CCTTATCCTATCTTAACATGCCTCTGGGTGGGAATCCTCGATGTGACTCTTTCTGGGATCCTATCATTGAAAGAATTCGTAGAAAGTTTGAAAGCTGGAAGTTTTCATAC
ATTTCGAAATGGGGTTGGCTCACTCTCATTCAATCGATTTTTAGTTGCCTGCATATT
mRNA sequenceShow/hide mRNA sequence
GATTTTCATGCATCACACCTTCTGTTCGCTGACGATATTCTTCTATTCTCTAGCGCAGACATTACTAAACTTTGTAATCTTTATGGGCTGTTACAATCCTTTGAGCTTTC
GTTGGATCTCAACATGAATCTGCATAAGCCATCATTTTCTGGTTTTAACATTTCCAACGATTACCTTCTGCAGCGAGCTCAGATTTGGAGTATCCCTACTGTCTCACTTC
CCTTATCCTATCTTAACATGCCTCTGGGTGGGAATCCTCGATGTGACTCTTTCTGGGATCCTATCATTGAAAGAATTCGTAGAAAGTTTGAAAGCTGGAAGTTTTCATAC
ATTTCGAAATGGGGTTGGCTCACTCTCATTCAATCGATTTTTAGTTGCCTGCATATT
Protein sequenceShow/hide protein sequence
DFHASHLLFADDILLFSSADITKLCNLYGLLQSFELSLDLNMNLHKPSFSGFNISNDYLLQRAQIWSIPTVSLPLSYLNMPLGGNPRCDSFWDPIIERIRRKFESWKFSY
ISKWGWLTLIQSIFSCLHI