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MS016034 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016034
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold217:307811..308062
RNA-Seq ExpressionMS016034
SyntenyMS016034
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023885132.1 uncharacterized protein LOC111997287 [Quercus suber]1.1e-0536.84Show/hide
Query:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIP
        R++ E DS  +I+ L H A  L        DI+L ++ F F+ FV+V H CN +AD LAK++  ++ +  W H++P
Subjt:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIP

XP_023885249.1 uncharacterized protein LOC111997399 [Quercus suber]1.1e-0538.16Show/hide
Query:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIP
        +++ E D   VI  + H    L        DIK+LA +F+FIQF HV   CN +AD L K++  S+S   W  E+P
Subjt:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIP

XP_030930925.1 uncharacterized protein LOC115956767 [Quercus lobata]1.8e-0535.06Show/hide
Query:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIPL
        R++ E DSL +I+ L   +  L    V   DI++L   F+ + F HVP  CN +AD LAK++  ++    W  +IP+
Subjt:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIPL

XP_030936447.1 uncharacterized protein LOC115961645 [Quercus lobata]1.7e-0638.16Show/hide
Query:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIP
        R++ E DS  +I+ L H A  L       +DI L +T F+F++FVHV   CN +AD LAK++  ++ +  W H++P
Subjt:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIP

XP_030969741.1 uncharacterized protein LOC115990018 [Quercus lobata]1.4e-0535.53Show/hide
Query:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIP
        R+++E DS  +I+ L H A  L        DI+L ++ F+F++FVHV   CN +AD LAK++  ++    W +++P
Subjt:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIP

TrEMBL top hitse value%identityAlignment
A0A498HAW7 RNase H domain-containing protein1.7e-0436.84Show/hide
Query:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIP
        +++VESDS++VIS+LN          +   D+  LA  F  ++F+H    CN +A  LAK +L S ++  WF E P
Subjt:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIP

A0A498J3L0 RNase H domain-containing protein1.2e-0537.66Show/hide
Query:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIPL
        +++VESD L+ I+ LN     L        D+  LA+ F  ++F+HV   CN +A LLAK +L S ++  WF E P+
Subjt:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIPL

A0A6J1DZK3 uncharacterized protein LOC1110249681.3e-0433.33Show/hide
Query:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIPLWLLCLGE
        R++VE+DSLE ++L+   +P  G    W  DI+  A +F+ I F HV    N +A  L + ++       W  + P+WL  L E
Subjt:  RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIPLWLLCLGE

A0A803PC16 Uncharacterized protein1.3e-0438.36Show/hide
Query:  VESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIP
        +E+DSL V+  L+     +       H+I LL +NF   Q  HV    N  A LLA+ +L   S+CSW  EIP
Subjt:  VESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIP

A0A803QJ22 Uncharacterized protein9.8e-0538.36Show/hide
Query:  VESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIP
        +E+DSL V+  L+     +       H+I LL +NF   Q  HV    N  A LLA+ +L   S+CSW  EIP
Subjt:  VESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGATTACTTGTGGAATCAGATTCTCTGGAGGTAATTTCTCTCCTAAATCACCCTGCGCCGTCTCTTGGTCCTGAAAGGGTGTGGACTCATGACATCAAGCTTCTAGCGAC
AAATTTTGAGTTCATTCAATTTGTGCATGTTCCTCACCGCTGCAACCGCCTTGCCGATTTGCTTGCGAAGCGCTCCCTGCGCTCTATGTCTTCATGTTCTTGGTTTCACG
AAATTCCCCTTTGGTTGCTATGTCTTGGGGAG
mRNA sequenceShow/hide mRNA sequence
CGATTACTTGTGGAATCAGATTCTCTGGAGGTAATTTCTCTCCTAAATCACCCTGCGCCGTCTCTTGGTCCTGAAAGGGTGTGGACTCATGACATCAAGCTTCTAGCGAC
AAATTTTGAGTTCATTCAATTTGTGCATGTTCCTCACCGCTGCAACCGCCTTGCCGATTTGCTTGCGAAGCGCTCCCTGCGCTCTATGTCTTCATGTTCTTGGTTTCACG
AAATTCCCCTTTGGTTGCTATGTCTTGGGGAG
Protein sequenceShow/hide protein sequence
RLLVESDSLEVISLLNHPAPSLGPERVWTHDIKLLATNFEFIQFVHVPHRCNRLADLLAKRSLRSMSSCSWFHEIPLWLLCLGE