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MS016070 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016070
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionstructure-specific endonuclease subunit SLX1
Genome locationscaffold9_2:162637..166298
RNA-Seq ExpressionMS016070
SyntenyMS016070
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR000305 - GIY-YIG endonuclease
IPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151512.1 structure-specific endonuclease subunit SLX1 [Cucumis sativus]5.6e-6273.99Show/hide
Query:  MRLLSHTFRCHKSPISNP--KPSSSSSTKDPSAATLSFESQLKP--KPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACM
        MRLLSHTFRC K PISNP    SSSSS+KDP   TL  +S+ KP  K WCVYLIISSNSP KTYVGVTL+F RRLKQHNGEIKGGAKATRAGRPW+CAC 
Subjt:  MRLLSHTFRCHKSPISNP--KPSSSSSTKDPSAATLSFESQLKP--KPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACM

Query:  IHGFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF
        IHGFKDQSQACEFESKWK+VSRKI++++K++   +  D+Q LRLLK+R+RAL KVK +FDCS+FEFDW+LDPF
Subjt:  IHGFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF

XP_008461838.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]5.6e-6274.27Show/hide
Query:  MRLLSHTFRCHKSPISNPK--PSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIH
        MRLLS TFRC K PISNP+   SSSSSTK P+      E   KPK WCVYLIISSNSP KTYVGVTL+F RRLKQHNGEIKGGAKAT+AGRPW+CAC IH
Subjt:  MRLLSHTFRCHKSPISNPK--PSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIH

Query:  GFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF
        GFKDQSQACEFESKWK+VSRKI++++K+D   +Q D Q LRLLK+RQRAL KVK +FDCS FEFDW+LDPF
Subjt:  GFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF

XP_022152567.1 structure-specific endonuclease subunit SLX1 [Momordica charantia]1.2e-8898.82Show/hide
Query:  MRLLSHTFRCHKSPISNPKPSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGF
        MRLLSHTFRCHKSPISNPKPSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGF
Subjt:  MRLLSHTFRCHKSPISNPKPSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGF

Query:  KDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF
        KDQSQACEFESKWKEVSRKIAHKRKKD EEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFD QLDPF
Subjt:  KDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF

XP_023528241.1 structure-specific endonuclease subunit slx1 [Cucurbita pepo subsp. pepo]4.4e-5970.41Show/hide
Query:  MRLLSHTFRCHKSPISNPKPSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGF
        MRLLS TFR  K PIS+ + S SSS+      TL  +S+ +PK WCVYLIISSN P KTYVGVTL+F RRLKQHNGEIKGGAKATRAGRPW+CAC IHGF
Subjt:  MRLLSHTFRCHKSPISNPKPSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGF

Query:  KDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF
        KDQSQACEFESKWKE+ RK+ H RK     E+ D+Q LRLLK RQRAL KVK +FDC++FEFDW+LDPF
Subjt:  KDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF

XP_038903984.1 structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]6.8e-6073.1Show/hide
Query:  MRLLSHTFRCHKSPISNPK--PSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIH
        MRLLS TFR  K   SN +   SSSSSTKDP    L  +S+ KPK WCVYLIISSNSP KTYVGVTL+F RRLKQHNGEIKGGAKATR GRPW+CAC IH
Subjt:  MRLLSHTFRCHKSPISNPK--PSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIH

Query:  GFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF
        GFKDQ QACEFESKWKEVSRKI++K+K+D   +Q D+Q LRLLK+RQRAL KVK +FDCS+FEF+W+LDPF
Subjt:  GFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ9 GIY-YIG domain-containing protein2.7e-6273.99Show/hide
Query:  MRLLSHTFRCHKSPISNP--KPSSSSSTKDPSAATLSFESQLKP--KPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACM
        MRLLSHTFRC K PISNP    SSSSS+KDP   TL  +S+ KP  K WCVYLIISSNSP KTYVGVTL+F RRLKQHNGEIKGGAKATRAGRPW+CAC 
Subjt:  MRLLSHTFRCHKSPISNP--KPSSSSSTKDPSAATLSFESQLKP--KPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACM

Query:  IHGFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF
        IHGFKDQSQACEFESKWK+VSRKI++++K++   +  D+Q LRLLK+R+RAL KVK +FDCS+FEFDW+LDPF
Subjt:  IHGFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF

A0A1S3CFH5 structure-specific endonuclease subunit slx12.7e-6274.27Show/hide
Query:  MRLLSHTFRCHKSPISNPK--PSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIH
        MRLLS TFRC K PISNP+   SSSSSTK P+      E   KPK WCVYLIISSNSP KTYVGVTL+F RRLKQHNGEIKGGAKAT+AGRPW+CAC IH
Subjt:  MRLLSHTFRCHKSPISNPK--PSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIH

Query:  GFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF
        GFKDQSQACEFESKWK+VSRKI++++K+D   +Q D Q LRLLK+RQRAL KVK +FDCS FEFDW+LDPF
Subjt:  GFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF

A0A6J1DGL6 structure-specific endonuclease subunit SLX15.8e-8998.82Show/hide
Query:  MRLLSHTFRCHKSPISNPKPSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGF
        MRLLSHTFRCHKSPISNPKPSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGF
Subjt:  MRLLSHTFRCHKSPISNPKPSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGF

Query:  KDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF
        KDQSQACEFESKWKEVSRKIAHKRKKD EEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFD QLDPF
Subjt:  KDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF

A0A6J1F1V2 structure-specific endonuclease subunit slx12.4e-5871.76Show/hide
Query:  MRLLSHTFRCHKSPISNPK--PSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIH
        MRLLS TFR  K PIS+P+   SSSSSTK P   TL  +S+ +PK WCVYLIISSN P KTYVGVTL+F RRLKQHNGEIKGGAKATRAGRPW+CAC IH
Subjt:  MRLLSHTFRCHKSPISNPK--PSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIH

Query:  GFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDP
        GFKDQSQACEFESKWKE+ RK+ H RK     E+ D+  LRLLK RQRAL KVK +FDC++FEFDW+LDP
Subjt:  GFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDP

A0A6J1J5C9 structure-specific endonuclease subunit slx1 isoform X18.2e-5971.35Show/hide
Query:  MRLLSHTFRCHKSPISNPK--PSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIH
        MRLLS TFR  K PIS+P+   SSSSSTK P   TL+ +S+ + K WCVYLIISSN P KTYVGVTL+F RRLKQHNGEIKGGAKATRAGRPW+CAC IH
Subjt:  MRLLSHTFRCHKSPISNPK--PSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIH

Query:  GFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF
        GFK+QSQACEFESKWKE+ RK++H RK     E+ D+Q LRLLK RQRAL KVK +FDC++FEFDW+LDPF
Subjt:  GFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF

SwissProt top hitse value%identityAlignment
A4I1H7 Structure-specific endonuclease subunit SLX1 homolog4.0e-1042.68Show/hide
Query:  CVYLIISSNSPFK--TYVGVTLNFSRRLKQHNGEIKGGAKAT-RAGRPWVCACMIHGFKDQSQACEFESKWKE--VSRKIAH
        CVYL+ S +   +   Y+G T+N  RRL+QHNGE+  GA+ T R GRPW   C + GF D   A +FE  W+    S ++ H
Subjt:  CVYLIISSNSPFK--TYVGVTLNFSRRLKQHNGEIKGGAKAT-RAGRPWVCACMIHGFKDQSQACEFESKWKE--VSRKIAH

B6JY16 Structure-specific endonuclease subunit slx18.5e-1346.48Show/hide
Query:  WCVYLIISSNSPFKT-YVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGFKDQSQACEFESKWK
        +C YL++S  +  ++ Y+G T + +RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +  A +FE  W+
Subjt:  WCVYLIISSNSPFKT-YVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGFKDQSQACEFESKWK

B8MDD1 Structure-specific endonuclease subunit slx11.8e-1042.7Show/hide
Query:  TLSFESQL-KPKP--WCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAG--RPWVCACMIHGFKDQSQACEFESKWKEV
        T+S E+ L KP P  +C YL+ S+  P   Y+G T + +RRL+QHNG  KGGAK T     RPW    ++ GF  ++ A +FE  W+ V
Subjt:  TLSFESQL-KPKP--WCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAG--RPWVCACMIHGFKDQSQACEFESKWKEV

Q5CT62 Structure-specific endonuclease subunit SLX1 homolog1.2e-0943.28Show/hide
Query:  YLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGFKDQSQACEFESKWK
        Y ++S      +Y+G ++N  RRL+QHNGEIK GAK T++G PW     + GF D+  A  FE  W+
Subjt:  YLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGFKDQSQACEFESKWK

Q9P7M3 Structure-specific endonuclease subunit slx12.1e-1143.24Show/hide
Query:  WCVYLIIS--SNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGFKDQSQACEFESKWKEV
        +C YL+ S  + S    Y+G T +  RRL+QHNGEI GGA  T+ GRPW  +C+++GF ++  A +FE  W+ +
Subjt:  WCVYLIIS--SNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGFKDQSQACEFESKWKEV

Arabidopsis top hitse value%identityAlignment
AT2G30350.2 Excinuclease ABC, C subunit, N-terminal9.0e-1040.79Show/hide
Query:  YLIISSNSPFK--TYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGFKDQSQACEFESKWKEVSRKIA
        YL+ S +   K  TY+G T+N  RR++QHNGEI  GA  T+  RPW     I+GF     A +FE  W+     +A
Subjt:  YLIISSNSPFK--TYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGFKDQSQACEFESKWKEVSRKIA

AT5G43210.1 Excinuclease ABC, C subunit, N-terminal3.9e-3751.45Show/hide
Query:  RLLSHTFRCHKSPISNPKPSSSSSTKD-------PSAATLSFESQL-KPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVC
        RLLS TF   K   SNPK     + K+       PS+++    S++ K K W VYLI+S+  P KTYVG+T +FSRRLKQHNGEI+GGAKA+ AGRPW+C
Subjt:  RLLSHTFRCHKSPISNPKPSSSSSTKD-------PSAATLSFESQL-KPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVC

Query:  ACMIHGFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQL
        AC+I GF   SQA  FESKWK  +RK+  +RKKD +  Q+D     LL++R+RAL KV+   DCS  E DW++
Subjt:  ACMIHGFKDQSQACEFESKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTCCTCTCTCACACATTTCGTTGCCATAAATCCCCAATTTCAAATCCAAAACCCTCGTCTTCTTCTTCAACCAAGGATCCATCTGCTGCGACGTTGAGCTTCGA
ATCGCAGCTGAAGCCGAAGCCATGGTGTGTGTATCTCATCATCTCCTCCAATTCCCCCTTCAAAACCTATGTTGGGGTCACCCTCAACTTCTCTCGCCGTTTGAAACAGC
ATAATGGTGAAATAAAAGGCGGTGCAAAAGCAACTCGAGCAGGACGACCCTGGGTTTGTGCGTGCATGATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAATTTGAA
TCAAAATGGAAAGAAGTTTCAAGGAAAATTGCCCATAAGAGAAAGAAGGATGGTGAAGAAGAGCAGGCAGATGAACAGAAATTAAGATTGCTGAAGAACAGGCAAAGAGC
TCTAGAAAAAGTGAAGTTTATGTTTGATTGCAGCCGATTTGAGTTTGATTGGCAATTGGATCCTTTC
mRNA sequenceShow/hide mRNA sequence
ATGAGACTCCTCTCTCACACATTTCGTTGCCATAAATCCCCAATTTCAAATCCAAAACCCTCGTCTTCTTCTTCAACCAAGGATCCATCTGCTGCGACGTTGAGCTTCGA
ATCGCAGCTGAAGCCGAAGCCATGGTGTGTGTATCTCATCATCTCCTCCAATTCCCCCTTCAAAACCTATGTTGGGGTCACCCTCAACTTCTCTCGCCGTTTGAAACAGC
ATAATGGTGAAATAAAAGGCGGTGCAAAAGCAACTCGAGCAGGACGACCCTGGGTTTGTGCGTGCATGATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAATTTGAA
TCAAAATGGAAAGAAGTTTCAAGGAAAATTGCCCATAAGAGAAAGAAGGATGGTGAAGAAGAGCAGGCAGATGAACAGAAATTAAGATTGCTGAAGAACAGGCAAAGAGC
TCTAGAAAAAGTGAAGTTTATGTTTGATTGCAGCCGATTTGAGTTTGATTGGCAATTGGATCCTTTC
Protein sequenceShow/hide protein sequence
MRLLSHTFRCHKSPISNPKPSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGFKDQSQACEFE
SKWKEVSRKIAHKRKKDGEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDWQLDPF