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MS016091 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016091
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA/RNP complex-1-interacting phosphatase, putative
Genome locationscaffold9_2:316239..316595
RNA-Seq ExpressionMS016091
SyntenyMS016091
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048367.1 putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa]7.7e-3464.57Show/hide
Query:  MAALSAGHRHFF--RRGAAAQPLRTRRSSPKSIVLLCRHSQDP------SEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLS
        MAALSAGHRHFF    G+A    R R  SP+SI +LC H+QDP      S+E +K+  + +++ + GFV+RFEKMG++LKEKLSPQRKGDWKD+ LMSLS
Subjt:  MAALSAGHRHFF--RRGAAAQPLRTRRSSPKSIVLLCRHSQDP------SEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLS

Query:  FAVYVYISQKIVCAYFVWMSMPKQQLW
        FAVYVYISQKIVCAYF+WMSMPK  LW
Subjt:  FAVYVYISQKIVCAYFVWMSMPKQQLW

KAG6581569.1 hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sororia]5.0e-3369.35Show/hide
Query:  MAALSAGHRHFFRRGAAAQPLRTRRSSPKSIVLLC--RHSQDP---SEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAV
        MAALSAGHRHFF     A     R  SP+ IVLLC   H+QDP   SEE +K+ +E KQ  + GF++R++KMGMELKEKLSPQRKGDWKDV LMSLSFAV
Subjt:  MAALSAGHRHFFRRGAAAQPLRTRRSSPKSIVLLC--RHSQDP---SEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAV

Query:  YVYISQKIVCAYFVWMSMPKQQLW
        YVYISQKIVCAYF+WMSMPK QLW
Subjt:  YVYISQKIVCAYFVWMSMPKQQLW

KAG6606884.1 hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sororia]1.7e-3673.77Show/hide
Query:  MAALSAGHRHFFRRGAAAQPLRTRRSSPKSIVLLCRHSQ------DPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFA
        MAALSAGHR+FF  G+AA   R R  SP+SIVLLC H+Q      DPSEE  K+ E+ K+Q I GFV+RFEKMG+ELKEKLSPQRKGDWKD+ LMSLSFA
Subjt:  MAALSAGHRHFFRRGAAAQPLRTRRSSPKSIVLLCRHSQ------DPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFA

Query:  VYVYISQKIVCAYFVWMSMPKQ
        VYVYISQKIVCAYFVWMSMPKQ
Subjt:  VYVYISQKIVCAYFVWMSMPKQ

KGN58582.1 hypothetical protein Csa_001602 [Cucumis sativus]7.7e-3464.57Show/hide
Query:  MAALSAGHRHFF--RRGAAAQPLRTRRSSPKSIVLLCRHSQDP------SEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLS
        MAALSAGHRHFF  + G+A    R R  SP+SI +LC H+QDP      SEE +K+  + +++ + GFV+RFEKMG++LKEKLSPQRKGDWKD+ LMSLS
Subjt:  MAALSAGHRHFF--RRGAAAQPLRTRRSSPKSIVLLCRHSQDP------SEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLS

Query:  FAVYVYISQKIVCAYFVWMSMPKQQLW
        FAVYVYISQKIVCAYF+WM+MPK  LW
Subjt:  FAVYVYISQKIVCAYFVWMSMPKQQLW

XP_022152649.1 uncharacterized protein LOC111020315 [Momordica charantia]1.7e-5799.16Show/hide
Query:  MAALSAGHRHFFRRGAAAQPLRTRRSSPKSIVLLCRHSQDPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYIS
        MAALSAGHRHFFRRGAAAQ LRTRRSSPKSIVLLCRHSQDPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYIS
Subjt:  MAALSAGHRHFFRRGAAAQPLRTRRSSPKSIVLLCRHSQDPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYIS

Query:  QKIVCAYFVWMSMPKQQLW
        QKIVCAYFVWMSMPKQQLW
Subjt:  QKIVCAYFVWMSMPKQQLW

TrEMBL top hitse value%identityAlignment
A0A059ADD2 Uncharacterized protein2.8e-2152.5Show/hide
Query:  MAALSAGHRHFFRRGAAAQPLRTRRSSPKSIVLLC----RHSQDPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVY
        MA+ S  H +F  R  A Q L+    S   I + C    R   DP+ +  K+ ++ K+    G VE FEK+G  LK  L PQRKGDWKD+ALMSLSFAVY
Subjt:  MAALSAGHRHFFRRGAAAQPLRTRRSSPKSIVLLC----RHSQDPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVY

Query:  VYISQKIVCAYFVWMSMPKQ
        VYISQKIVCAY  W+SMPKQ
Subjt:  VYISQKIVCAYFVWMSMPKQ

A0A0A0LD14 Uncharacterized protein3.7e-3464.57Show/hide
Query:  MAALSAGHRHFF--RRGAAAQPLRTRRSSPKSIVLLCRHSQDP------SEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLS
        MAALSAGHRHFF  + G+A    R R  SP+SI +LC H+QDP      SEE +K+  + +++ + GFV+RFEKMG++LKEKLSPQRKGDWKD+ LMSLS
Subjt:  MAALSAGHRHFF--RRGAAAQPLRTRRSSPKSIVLLCRHSQDP------SEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLS

Query:  FAVYVYISQKIVCAYFVWMSMPKQQLW
        FAVYVYISQKIVCAYF+WM+MPK  LW
Subjt:  FAVYVYISQKIVCAYFVWMSMPKQQLW

A0A5B7BW37 Uncharacterized protein4.0e-2053.78Show/hide
Query:  MAALSAGHRHFFRRGAAAQPLRTRRSSPKSIVLLCRHS---QDPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYV
        MAALS GH  F +R ++ Q L+ + +    I + C+       PS E  KE E+ K+Q +  F    EK+G  LKE LSP++KGDWKDV LMSLSFAVYV
Subjt:  MAALSAGHRHFFRRGAAAQPLRTRRSSPKSIVLLCRHS---QDPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYV

Query:  YISQKIVCAYFVWMSMPKQ
        YISQKIVCAY  WMSM KQ
Subjt:  YISQKIVCAYFVWMSMPKQ

A0A5D3BX35 Putative RNA/RNP complex-1-interacting phosphatase3.7e-3464.57Show/hide
Query:  MAALSAGHRHFF--RRGAAAQPLRTRRSSPKSIVLLCRHSQDP------SEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLS
        MAALSAGHRHFF    G+A    R R  SP+SI +LC H+QDP      S+E +K+  + +++ + GFV+RFEKMG++LKEKLSPQRKGDWKD+ LMSLS
Subjt:  MAALSAGHRHFF--RRGAAAQPLRTRRSSPKSIVLLCRHSQDP------SEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLS

Query:  FAVYVYISQKIVCAYFVWMSMPKQQLW
        FAVYVYISQKIVCAYF+WMSMPK  LW
Subjt:  FAVYVYISQKIVCAYFVWMSMPKQQLW

A0A6J1DGN1 uncharacterized protein LOC1110203158.3e-5899.16Show/hide
Query:  MAALSAGHRHFFRRGAAAQPLRTRRSSPKSIVLLCRHSQDPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYIS
        MAALSAGHRHFFRRGAAAQ LRTRRSSPKSIVLLCRHSQDPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYIS
Subjt:  MAALSAGHRHFFRRGAAAQPLRTRRSSPKSIVLLCRHSQDPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYIS

Query:  QKIVCAYFVWMSMPKQQLW
        QKIVCAYFVWMSMPKQQLW
Subjt:  QKIVCAYFVWMSMPKQQLW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52070.1 unknown protein3.2e-0945.35Show/hide
Query:  VLLCRHSQDPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIVCAYFVW--MSMPK
        V+ CR  + P     +E E   Q+ +   +    K+G  LK +   ++KGD KD+ LMSLSFAVYVYISQ +VCAYF W  +S PK
Subjt:  VLLCRHSQDPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIVCAYFVW--MSMPK

AT3G52070.2 unknown protein3.2e-0945.35Show/hide
Query:  VLLCRHSQDPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIVCAYFVW--MSMPK
        V+ CR  + P     +E E   Q+ +   +    K+G  LK +   ++KGD KD+ LMSLSFAVYVYISQ +VCAYF W  +S PK
Subjt:  VLLCRHSQDPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIVCAYFVW--MSMPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCCCTCTCCGCCGGCCACCGCCATTTCTTCCGCCGCGGCGCCGCCGCCCAGCCGCTCAGAACCAGACGCAGCAGCCCCAAATCGATCGTCCTCCTCTGCCGCCA
CAGCCAAGATCCTTCAGAAGAAAACTCGAAGGAAGGGGAAGAAAGAAAGCAGCAGAAGATTGGAGGGTTTGTTGAGCGATTTGAGAAGATGGGAATGGAATTGAAGGAGA
AATTGAGCCCTCAGAGAAAAGGGGACTGGAAAGATGTGGCATTGATGAGCTTATCTTTTGCTGTTTATGTGTATATTTCTCAGAAGATTGTGTGCGCTTATTTTGTTTGG
ATGTCAATGCCAAAGCAACAACTATGG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCCCTCTCCGCCGGCCACCGCCATTTCTTCCGCCGCGGCGCCGCCGCCCAGCCGCTCAGAACCAGACGCAGCAGCCCCAAATCGATCGTCCTCCTCTGCCGCCA
CAGCCAAGATCCTTCAGAAGAAAACTCGAAGGAAGGGGAAGAAAGAAAGCAGCAGAAGATTGGAGGGTTTGTTGAGCGATTTGAGAAGATGGGAATGGAATTGAAGGAGA
AATTGAGCCCTCAGAGAAAAGGGGACTGGAAAGATGTGGCATTGATGAGCTTATCTTTTGCTGTTTATGTGTATATTTCTCAGAAGATTGTGTGCGCTTATTTTGTTTGG
ATGTCAATGCCAAAGCAACAACTATGG
Protein sequenceShow/hide protein sequence
MAALSAGHRHFFRRGAAAQPLRTRRSSPKSIVLLCRHSQDPSEENSKEGEERKQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIVCAYFVW
MSMPKQQLW