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MS016095 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016095
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic-like
Genome locationscaffold9_2:332760..333074
RNA-Seq ExpressionMS016095
SyntenyMS016095
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR040296 - Photosystem II 5kDa protein, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TKY67985.1 Photosystem II 5 kDa protein [Spatholobus suberectus]6.4e-2459.43Show/hide
Query:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVA-AAEPKPGSPEARKFYAPVCVTNPT
        MA+I+MT++ LG S   N  P++S RRLVV NA  A +GEK K+++  +K+ S GRR++MFAAAAAAVC++ G+A A EPK G+PEA+K YAPVCVT PT
Subjt:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVA-AAEPKPGSPEARKFYAPVCVTNPT

Query:  AKICRK
        AKIC K
Subjt:  AKICRK

XP_014494186.1 photosystem II 5 kDa protein, chloroplastic-like [Vigna radiata var. radiata]7.1e-2355.66Show/hide
Query:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAA-EPKPGSPEARKFYAPVCVTNPT
        MA+I+M ++++G S   N+ P++S RRLVV NA++A +GEKT+V++  +K+ + GRR++MFAAAAAAVC++ G+A A EPK G+PEA+K Y+PVCVT PT
Subjt:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAA-EPKPGSPEARKFYAPVCVTNPT

Query:  AKICRK
        A+IC K
Subjt:  AKICRK

XP_015881637.1 photosystem II 5 kDa protein, chloroplastic-like [Ziziphus jujuba]9.3e-2354.29Show/hide
Query:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTA
        MA+ +MT++ LG +   +  P+++ RRLVV  A  A++GEK  +N   +K+ + GRRDLMFAAAAAAVC+  G+A A+PKPG+PEA+K YAP+CVT PTA
Subjt:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTA

Query:  KICRK
        K+C K
Subjt:  KICRK

XP_017431408.1 PREDICTED: photosystem II 5 kDa protein, chloroplastic [Vigna angularis]4.2e-2356.6Show/hide
Query:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAA-EPKPGSPEARKFYAPVCVTNPT
        MA+I+M ++++G S   N+ P++S RRLVV NA++A +GEKT+V++  +K+ + GRR++MFAAAAAAVC++ G+A A EPK G+PEA+K Y PVCVT PT
Subjt:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAA-EPKPGSPEARKFYAPVCVTNPT

Query:  AKICRK
        AKIC K
Subjt:  AKICRK

XP_022152600.1 photosystem II 5 kDa protein, chloroplastic-like [Momordica charantia]1.3e-4597.14Show/hide
Query:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTA
        MATISMTSAMLGISAR NQHPLSSHRRLVVVN+TEASQGEKTKVNF VEKDCSKGRRDLMFAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTA
Subjt:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTA

Query:  KICRK
        KICRK
Subjt:  KICRK

TrEMBL top hitse value%identityAlignment
A0A0L9V8D5 Uncharacterized protein2.0e-2356.6Show/hide
Query:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAA-EPKPGSPEARKFYAPVCVTNPT
        MA+I+M ++++G S   N+ P++S RRLVV NA++A +GEKT+V++  +K+ + GRR++MFAAAAAAVC++ G+A A EPK G+PEA+K Y PVCVT PT
Subjt:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAA-EPKPGSPEARKFYAPVCVTNPT

Query:  AKICRK
        AKIC K
Subjt:  AKICRK

A0A1S3TKA3 photosystem II 5 kDa protein, chloroplastic-like3.4e-2355.66Show/hide
Query:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAA-EPKPGSPEARKFYAPVCVTNPT
        MA+I+M ++++G S   N+ P++S RRLVV NA++A +GEKT+V++  +K+ + GRR++MFAAAAAAVC++ G+A A EPK G+PEA+K Y+PVCVT PT
Subjt:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAA-EPKPGSPEARKFYAPVCVTNPT

Query:  AKICRK
        A+IC K
Subjt:  AKICRK

A0A2N9GPB8 Uncharacterized protein6.3e-2560.38Show/hide
Query:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVA-AAEPKPGSPEARKFYAPVCVTNPT
        MA+I+MTS++LG +   N+ P ++ RRLV+ NA  A++GEK KV     K+ + GRRDL+FAAAAAA+C++ G+A A EPKPG+PEARK YAPVCVT PT
Subjt:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVA-AAEPKPGSPEARKFYAPVCVTNPT

Query:  AKICRK
        AKICRK
Subjt:  AKICRK

A0A6J1DEE2 photosystem II 5 kDa protein, chloroplastic-like6.4e-4697.14Show/hide
Query:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTA
        MATISMTSAMLGISAR NQHPLSSHRRLVVVN+TEASQGEKTKVNF VEKDCSKGRRDLMFAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTA
Subjt:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTA

Query:  KICRK
        KICRK
Subjt:  KICRK

A0A6P4A783 photosystem II 5 kDa protein, chloroplastic-like4.5e-2354.29Show/hide
Query:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTA
        MA+ +MT++ LG +   +  P+++ RRLVV  A  A++GEK  +N   +K+ + GRRDLMFAAAAAAVC+  G+A A+PKPG+PEA+K YAP+CVT PTA
Subjt:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTA

Query:  KICRK
        K+C K
Subjt:  KICRK

SwissProt top hitse value%identityAlignment
B3EWI4 Photosystem II 5 kDa protein, chloroplastic2.8e-1447.66Show/hide
Query:  MATISMTSAMLGIS-ARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAI--TGVAAAEPKPGSPEARKFYAPVCVTN
        MA+I+M S+ LG S   P + P ++ R +V+V A    +GE   V    E+  + GRR+L FA AAAA C++  T +A  EPK G+PEA+K Y+ VCVTN
Subjt:  MATISMTSAMLGIS-ARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAI--TGVAAAEPKPGSPEARKFYAPVCVTN

Query:  PTAKICR
        PTA+ICR
Subjt:  PTAKICR

P31336 Photosystem II 5 kDa protein, chloroplastic1.5e-2050.96Show/hide
Query:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTA
        MA+I+MT++ L  +      P  + RRLVV NA + +Q E  +++   + + + GRR++MFAAAAAA+C++ GVA AEPK GS EA+K YAPVCVT PTA
Subjt:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTA

Query:  KICR
        +ICR
Subjt:  KICR

Q39195 Photosystem II 5 kDa protein, chloroplastic8.4e-1146.73Show/hide
Query:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAA---EPKPGSPEARKFYAPVCVTN
        MA+++MT+      A+      +  RRL VV    AS  + T    V E+  +  RRDLMF AAAAAVC++  VA A   EPK G+  A+K YA VCVT 
Subjt:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAA---EPKPGSPEARKFYAPVCVTN

Query:  PTAKICR
        PTAKICR
Subjt:  PTAKICR

Arabidopsis top hitse value%identityAlignment
AT1G51400.1 Photosystem II 5 kD protein8.4e-1447.66Show/hide
Query:  MATISMTSAML-GISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAA--EPKPGSPEARKFYAPVCVTN
        MA+++MTS+ L  +S  P     +S R L VV A+ +     T +    ++   K RRDL+F AAAAAVC++  VA A  EPK G+  A+K YAPVCVT 
Subjt:  MATISMTSAML-GISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAA--EPKPGSPEARKFYAPVCVTN

Query:  PTAKICR
        PTAKICR
Subjt:  PTAKICR

AT3G21055.1 photosystem II subunit T6.0e-1246.73Show/hide
Query:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAA---EPKPGSPEARKFYAPVCVTN
        MA+++MT+      A+      +  RRL VV    AS  + T    V E+  +  RRDLMF AAAAAVC++  VA A   EPK G+  A+K YA VCVT 
Subjt:  MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAA---EPKPGSPEARKFYAPVCVTN

Query:  PTAKICR
        PTAKICR
Subjt:  PTAKICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACCATCAGCATGACCTCTGCAATGCTTGGCATTTCAGCCCGTCCTAACCAGCATCCGTTGAGTTCCCACCGGAGATTAGTTGTCGTAAATGCTACTGAAGCTTC
TCAAGGGGAAAAGACGAAGGTCAATTTTGTCGTCGAGAAAGATTGCAGCAAAGGCAGAAGAGATTTGATGTTTGCTGCAGCAGCAGCTGCTGTTTGTGCCATTACCGGAG
TTGCTGCGGCGGAGCCAAAGCCGGGGAGTCCAGAGGCGAGGAAATTCTATGCCCCTGTTTGTGTGACCAATCCAACTGCCAAGATCTGTCGCAAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTACCATCAGCATGACCTCTGCAATGCTTGGCATTTCAGCCCGTCCTAACCAGCATCCGTTGAGTTCCCACCGGAGATTAGTTGTCGTAAATGCTACTGAAGCTTC
TCAAGGGGAAAAGACGAAGGTCAATTTTGTCGTCGAGAAAGATTGCAGCAAAGGCAGAAGAGATTTGATGTTTGCTGCAGCAGCAGCTGCTGTTTGTGCCATTACCGGAG
TTGCTGCGGCGGAGCCAAAGCCGGGGAGTCCAGAGGCGAGGAAATTCTATGCCCCTGTTTGTGTGACCAATCCAACTGCCAAGATCTGTCGCAAA
Protein sequenceShow/hide protein sequence
MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTAKICRK