; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016102 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016102
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMyb transcription factor
Genome locationscaffold9_2:392532..393573
RNA-Seq ExpressionMS016102
SyntenyMS016102
Gene Ontology termsNA
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606876.1 Transcription factor MYB46, partial [Cucurbita argyrosperma subsp. sororia]1.1e-7194.29Show/hide
Query:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
        MRKPEA LGKE+ EKNKYRKGLWSPEEDEKLMRYM+SNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
Subjt:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS

Query:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR
        RLPGRTDNEIKNFWNSTLKKRLKNN+SS+PF++HESSDPR
Subjt:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR

XP_004149614.1 transcription factor MYB46 [Cucumis sativus]1.1e-7195.71Show/hide
Query:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
        MRKPEAVLGKE+AEKNKYRKGLWSPEEDEKLMRYM++NGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
Subjt:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS

Query:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR
        RLPGRTDNEIKNFWNSTLKKRLKNN+SSSP+N HESSDPR
Subjt:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR

XP_008461794.1 PREDICTED: transcription factor MYB46-like [Cucumis melo]1.1e-7195.71Show/hide
Query:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
        MRKPEAVLGKE+AEKNKYRKGLWSPEEDEKLMRYM++NGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
Subjt:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS

Query:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR
        RLPGRTDNEIKNFWNSTLKKRLKNN+SSSP+N HESSDPR
Subjt:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR

XP_023525825.1 transcription factor MYB46-like [Cucurbita pepo subsp. pepo]1.1e-7194.29Show/hide
Query:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
        MRKPEA LGKE+ EKNKYRKGLWSPEEDEKLMRYM+SNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
Subjt:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS

Query:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR
        RLPGRTDNEIKNFWNSTLKKRLKNN+SS+PF++HESSDPR
Subjt:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR

XP_038905632.1 transcription factor MYB46-like [Benincasa hispida]2.5e-7195Show/hide
Query:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
        MRKPEAVLGKE+AEKNKYRKGLWSPEEDEKLMRYM++NGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
Subjt:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS

Query:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR
        RLPGRTDNEIKNFWNSTLKKRLKNN+SSSP+N HE+SDPR
Subjt:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR

TrEMBL top hitse value%identityAlignment
A0A1S3CFJ0 transcription factor MYB46-like5.4e-7295.71Show/hide
Query:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
        MRKPEAVLGKE+AEKNKYRKGLWSPEEDEKLMRYM++NGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
Subjt:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS

Query:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR
        RLPGRTDNEIKNFWNSTLKKRLKNN+SSSP+N HESSDPR
Subjt:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR

A0A5D3BPM7 Transcription factor MYB46-like5.4e-7295.71Show/hide
Query:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
        MRKPEAVLGKE+AEKNKYRKGLWSPEEDEKLMRYM++NGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
Subjt:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS

Query:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR
        RLPGRTDNEIKNFWNSTLKKRLKNN+SSSP+N HESSDPR
Subjt:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR

A0A6J1GC35 transcription factor MYB46-like2.1e-7193.57Show/hide
Query:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
        MRKPEA LGKE+ EKNKYRKGLWSPEEDEKLMRYM+S+GQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
Subjt:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS

Query:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR
        RLPGRTDNEIKNFWNSTLKKRLKNN+SS+PF++HESSDPR
Subjt:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR

A0A6J1J9A9 transcription factor MYB46-like1.3e-7094.29Show/hide
Query:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
        MRKPE V GKE+AEKNKYRKGLWSPEEDEKLMRYM++NGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
Subjt:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS

Query:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR
        RLPGRTDNEIKNFWNSTLKKRLKNN+SSSP+ SHESSDPR
Subjt:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR

A0A6J1KCL7 transcription factor MYB46-like1.0e-7092.86Show/hide
Query:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
        MRKPEA LGKE+ EKNKYRKGLWSPEEDEKLMRYM+SNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
Subjt:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS

Query:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR
        RLPGRTDNEIKNFWNSTLKKRLKNN+SS+PF++HE  DPR
Subjt:  RLPGRTDNEIKNFWNSTLKKRLKNNISSSPFNSHESSDPR

SwissProt top hitse value%identityAlignment
P20027 Myb-related protein Hv331.0e-4373.83Show/hide
Query:  KYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIASRLPGRTDNEIKNFWNS
        K RKGLWSPEEDEKL  +++ +G GCWS + R A L RCGKSCRLRWINYLRPDLKRG FS QEE+ IV LH ++GNRWSQIAS LPGRTDNEIKNFWNS
Subjt:  KYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIASRLPGRTDNEIKNFWNS

Query:  TLKKRLK
         +KK+L+
Subjt:  TLKKRLK

Q8LPH6 Transcription factor MYB869.9e-4776.15Show/hide
Query:  KNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIASRLPGRTDNEIKNFW
        K K RKGLWSPEEDEKL+ Y+  +G GCWS + + AGLQRCGKSCRLRWINYLRPDLKRGAFS  EE LI+ LH+ +GNRWSQIA+RLPGRTDNEIKNFW
Subjt:  KNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIASRLPGRTDNEIKNFW

Query:  NSTLKKRLK
        NS LKK+L+
Subjt:  NSTLKKRLK

Q8VZQ2 Transcription factor MYB618.9e-4877.06Show/hide
Query:  KNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIASRLPGRTDNEIKNFW
        K K RKGLWSPEEDEKL+ ++ ++G GCWS + + AGLQRCGKSCRLRWINYLRPDLKRGAFSP+EE LIV LH+++GNRWSQIASRLPGRTDNEIKN W
Subjt:  KNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIASRLPGRTDNEIKNFW

Query:  NSTLKKRLK
        NS++KK+LK
Subjt:  NSTLKKRLK

Q9C6U1 Transcription factor MYB833.6e-5770.7Show/hide
Query:  MRKPEAVLGKESAEKN----------KYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSL
        MRKP+    ++  + N          K RKGLWSP+EDEKL+RYM++NGQGCWSDIARNAGL RCGKSCRLRWINYLRPDLKRG+FSPQEE+LI HLHS+
Subjt:  MRKPEAVLGKESAEKN----------KYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSL

Query:  IGNRWSQIASRLPGRTDNEIKNFWNSTLKKRLKNNIS------SSPFNSHESS-DPR
        +GNRWSQIA+RLPGRTDNEIKNFWNSTLKKRLKNN +      SSP NS+ +S DPR
Subjt:  IGNRWSQIASRLPGRTDNEIKNFWNSTLKKRLKNNIS------SSPFNSHESS-DPR

Q9LXV2 Transcription factor MYB462.1e-5771.92Show/hide
Query:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
        MRKPE  +   + +  K +KGLWSPEED KLM+YM+SNGQGCWSD+A+NAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEE+LI+  HS++GNRWSQIA+
Subjt:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS

Query:  RLPGRTDNEIKNFWNSTLKKRLK---------NNISSSPFNSHESS
        RLPGRTDNEIKNFWNST+KKRLK         NN SSSP  + +SS
Subjt:  RLPGRTDNEIKNFWNSTLKKRLK---------NNISSSPFNSHESS

Arabidopsis top hitse value%identityAlignment
AT1G09540.1 myb domain protein 616.4e-4977.06Show/hide
Query:  KNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIASRLPGRTDNEIKNFW
        K K RKGLWSPEEDEKL+ ++ ++G GCWS + + AGLQRCGKSCRLRWINYLRPDLKRGAFSP+EE LIV LH+++GNRWSQIASRLPGRTDNEIKN W
Subjt:  KNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIASRLPGRTDNEIKNFW

Query:  NSTLKKRLK
        NS++KK+LK
Subjt:  NSTLKKRLK

AT3G08500.1 myb domain protein 832.6e-5870.7Show/hide
Query:  MRKPEAVLGKESAEKN----------KYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSL
        MRKP+    ++  + N          K RKGLWSP+EDEKL+RYM++NGQGCWSDIARNAGL RCGKSCRLRWINYLRPDLKRG+FSPQEE+LI HLHS+
Subjt:  MRKPEAVLGKESAEKN----------KYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSL

Query:  IGNRWSQIASRLPGRTDNEIKNFWNSTLKKRLKNNIS------SSPFNSHESS-DPR
        +GNRWSQIA+RLPGRTDNEIKNFWNSTLKKRLKNN +      SSP NS+ +S DPR
Subjt:  IGNRWSQIASRLPGRTDNEIKNFWNSTLKKRLKNNIS------SSPFNSHESS-DPR

AT4G01680.1 myb domain protein 551.2e-4775.23Show/hide
Query:  KNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIASRLPGRTDNEIKNFW
        K K RKGLWSPEEDEKL+RY+   G GCWS + + AGLQRCGKSCRLRWINYLRPDLKRGAFS  EE LI+ LH+++GNRWSQIA++LPGRTDNEIKN W
Subjt:  KNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIASRLPGRTDNEIKNFW

Query:  NSTLKKRLK
        NS LKK+L+
Subjt:  NSTLKKRLK

AT5G12870.1 myb domain protein 461.5e-5871.92Show/hide
Query:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS
        MRKPE  +   + +  K +KGLWSPEED KLM+YM+SNGQGCWSD+A+NAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEE+LI+  HS++GNRWSQIA+
Subjt:  MRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIAS

Query:  RLPGRTDNEIKNFWNSTLKKRLK---------NNISSSPFNSHESS
        RLPGRTDNEIKNFWNST+KKRLK         NN SSSP  + +SS
Subjt:  RLPGRTDNEIKNFWNSTLKKRLK---------NNISSSPFNSHESS

AT5G26660.1 myb domain protein 867.0e-4876.15Show/hide
Query:  KNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIASRLPGRTDNEIKNFW
        K K RKGLWSPEEDEKL+ Y+  +G GCWS + + AGLQRCGKSCRLRWINYLRPDLKRGAFS  EE LI+ LH+ +GNRWSQIA+RLPGRTDNEIKNFW
Subjt:  KNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIASRLPGRTDNEIKNFW

Query:  NSTLKKRLK
        NS LKK+L+
Subjt:  NSTLKKRLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGAAAATGAGGAAGCCGGAGGCGGTTCTCGGGAAAGAGAGCGCGGAGAAGAACAAGTACCGGAAGGGCCTGTGGTCGCCGGAGGAGGACGAGAAGCTGATGAGGTATAT
GGTGAGCAATGGGCAGGGATGCTGGAGTGACATTGCAAGGAATGCTGGTCTTCAGAGATGTGGAAAGAGTTGTCGTCTTCGTTGGATTAATTATCTCAGGCCTGACCTTA
AACGTGGAGCTTTCTCTCCTCAAGAAGAAGAGCTCATTGTCCACTTGCATTCCCTTATTGGCAACAGGTGGTCTCAAATTGCATCACGCTTGCCTGGACGAACGGACAAC
GAAATAAAGAATTTTTGGAACTCTACATTGAAGAAAAGGTTAAAAAACAACATTTCTTCCTCACCCTTCAACAGCCATGAATCATCGGATCCAAGA
mRNA sequenceShow/hide mRNA sequence
AGGAAAATGAGGAAGCCGGAGGCGGTTCTCGGGAAAGAGAGCGCGGAGAAGAACAAGTACCGGAAGGGCCTGTGGTCGCCGGAGGAGGACGAGAAGCTGATGAGGTATAT
GGTGAGCAATGGGCAGGGATGCTGGAGTGACATTGCAAGGAATGCTGGTCTTCAGAGATGTGGAAAGAGTTGTCGTCTTCGTTGGATTAATTATCTCAGGCCTGACCTTA
AACGTGGAGCTTTCTCTCCTCAAGAAGAAGAGCTCATTGTCCACTTGCATTCCCTTATTGGCAACAGGTGGTCTCAAATTGCATCACGCTTGCCTGGACGAACGGACAAC
GAAATAAAGAATTTTTGGAACTCTACATTGAAGAAAAGGTTAAAAAACAACATTTCTTCCTCACCCTTCAACAGCCATGAATCATCGGATCCAAGA
Protein sequenceShow/hide protein sequence
RKMRKPEAVLGKESAEKNKYRKGLWSPEEDEKLMRYMVSNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLIGNRWSQIASRLPGRTDN
EIKNFWNSTLKKRLKNNISSSPFNSHESSDPR