; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016108 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016108
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionarabinogalactan peptide 23-like
Genome locationscaffold9_2:431377..431556
RNA-Seq ExpressionMS016108
SyntenyMS016108
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019275.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-1485Show/hide
Query:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
        MEMKKI CA+LFAAA+VSAVVA  EA  PAP PTSGATAGLPA+GSLIGASLLSVAAYYL
Subjt:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
KAG7036581.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]3.8e-1383.05Show/hide
Query:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYY
        MEMKKI CA+LFAAA+VSAVVA  EA  PAP PTSGATAGLPA+ SLIGASLLSVAAYY
Subjt:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYY
XP_022932375.1 arabinogalactan peptide 23-like [Cucurbita moschata]6.5e-1380Show/hide
Query:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
        MEMKKI CAVLFAAA+V+A VA  EA  PAP PTS AT GLPA+GSLIGASLLSVAAYYL
Subjt:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
XP_022983304.1 arabinogalactan peptide 23-like [Cucurbita maxima]2.9e-1383.33Show/hide
Query:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
        MEMKKIACAVLFAAA+VSAVVA  EA  PAP P+SGA AGLPA+GS IGASLLSVAAYYL
Subjt:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
XP_022998512.1 arabinogalactan peptide 23-like [Cucurbita maxima]2.2e-1381.67Show/hide
Query:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
        MEM KI CA+LFAAA+VSAVVA  EA  PAP PTSGAT GLPA+GSLIGASLLSVAAYYL
Subjt:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
TrEMBL top hitse value%identityAlignment
A0A0A0L9U8 Uncharacterized protein3.5e-1276.67Show/hide
Query:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
        MEMKKIACAVLFAAA+V+AVVA+ EA  PAP P+SGA  G+PA+GSL+GASLLS AAYYL
Subjt:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
A0A6J1F209 arabinogalactan peptide 23-like3.1e-1380Show/hide
Query:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
        MEMKKI CAVLFAAA+V+A VA  EA  PAP PTS AT GLPA+GSLIGASLLSVAAYYL
Subjt:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
A0A6J1HQG2 arabinogalactan peptide 23-like3.1e-1380Show/hide
Query:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
        MEMKKI CAVLFAAA+V+A VA  EA  PAP PTS AT GLPA+GSLIGASLLSVAAYYL
Subjt:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
A0A6J1J6Y9 arabinogalactan peptide 23-like1.4e-1383.33Show/hide
Query:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
        MEMKKIACAVLFAAA+VSAVVA  EA  PAP P+SGA AGLPA+GS IGASLLSVAAYYL
Subjt:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
A0A6J1K873 arabinogalactan peptide 23-like1.1e-1381.67Show/hide
Query:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
        MEM KI CA+LFAAA+VSAVVA  EA  PAP PTSGAT GLPA+GSLIGASLLSVAAYYL
Subjt:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 233.3e-1268.33Show/hide
Query:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
        MEMKKIAC VLFAAAS++AV+A+ E   PAP P S A+A LPALGSL+GASL+S+ +YYL
Subjt:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)8.4e-1165.57Show/hide
Query:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAP-TSGATAGLPALGSLIGASLLSVAAYYL
        MEMKKIAC V+FAAAS++AV+A+ E   PAP P  SGA+  +PALGSL+GASL+S+ AYYL
Subjt:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAP-TSGATAGLPALGSLIGASLLSVAAYYL
AT3G57690.1 arabinogalactan protein 232.4e-1368.33Show/hide
Query:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL
        MEMKKIAC VLFAAAS++AV+A+ E   PAP P S A+A LPALGSL+GASL+S+ +YYL
Subjt:  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATGAAGAAAATCGCCTGCGCCGTCCTCTTCGCTGCCGCATCCGTCAGCGCCGTCGTGGCCAGCGGTGAGGCGCAGGGTCCGGCACCTGCACCGACCAGCGGCGC
CACCGCCGGCCTCCCAGCTCTCGGCTCTCTCATCGGTGCTTCGCTGCTCTCCGTCGCCGCCTACTACTTG
mRNA sequenceShow/hide mRNA sequence
ATGGAGATGAAGAAAATCGCCTGCGCCGTCCTCTTCGCTGCCGCATCCGTCAGCGCCGTCGTGGCCAGCGGTGAGGCGCAGGGTCCGGCACCTGCACCGACCAGCGGCGC
CACCGCCGGCCTCCCAGCTCTCGGCTCTCTCATCGGTGCTTCGCTGCTCTCCGTCGCCGCCTACTACTTG
Protein sequenceShow/hide protein sequence
MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL