CuGenDBv2

Gene ID	MS016113
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP synthase subunit beta, chloroplastic
Genome location	scaffold9_2:446529..446714
RNA-Seq Expression	MS016113
Synteny	MS016113
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0046961 - proton-transporting ATPase activity, rotational mechanism (molecular function)
InterPro domains	IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

AIN35046.1 AtpB [Gamocarpha alpina]

4.8e-19

83.87

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        AESKV +VY HMNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFI+NIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

EFH64636.1 ATPase beta subunit, partial [Arabidopsis lyrata subsp. lyrata]

1.1e-18

83.87

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        AESKV +VY  MNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFINNIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

OMP13146.1 hypothetical protein COLO4_02195 [Corchorus olitorius]

1.1e-18

82.26

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        +ESKV +VY HMNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFI+NIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

QGA84604.1 ATP synthase CF1 beta subunit, partial [Hymenostegia felicis]

2.4e-18

82.26

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        AESKV +VY  MNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFI+NIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

YP_009558891.1 ATP synthase CF1 beta subunit [Corallorhiza bentleyi]

1.4e-18

82.26

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        AESKV++VY  MNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFI+NIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

TrEMBL top hits

e value

%identity

Alignment

A0A088MA98 ATP synthase subunit beta, chloroplastic

2.3e-19

83.87

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        AESKV +VY HMNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFI+NIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

A0A1R3L1C3 ATP-synt_ab domain-containing protein

5.2e-19

82.26

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        +ESKV +VY HMNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFI+NIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

A0A411FBG6 ATP synthase subunit beta

6.7e-19

82.26

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        AESKV++VY  MNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFI+NIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

A0A411FC06 ATP synthase subunit beta

6.7e-19

82.26

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        AESKV++VY  MNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFI+NIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

D7KRH1 ATP synthase subunit beta (Fragment)

5.2e-19

83.87

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        AESKV +VY  MNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFINNIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

SwissProt top hits

e value

%identity

Alignment

A4QJC2 ATP synthase subunit beta, chloroplastic

5.3e-21

82.26

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        AESKV +VY  MNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFI+NIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

A4QJK6 ATP synthase subunit beta, chloroplastic

5.3e-21

82.26

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        AESKV +VY  MNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFI+NIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

Q7HDI4 ATP synthase subunit beta, chloroplastic

5.3e-21

82.26

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        AESKV +VY  MNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFI+NIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

Q95DR6 ATP synthase subunit beta, chloroplastic

5.3e-21

82.26

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        AESKV +VY  MNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFI+NIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

Q9TMQ4 ATP synthase subunit beta, chloroplastic

5.3e-21

82.26

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        AESKV +VY  MNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFI+NIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

Arabidopsis top hits

e value

%identity

Alignment

AT5G08670.1 ATP synthase alpha/beta family protein

3.7e-17

69.35

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        +ESK  +VY  MNEPP  R RVGLT LT+AEYFRD   QD+LLFI+NIFRF Q  SEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

AT5G08680.1 ATP synthase alpha/beta family protein

3.7e-17

69.35

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        +ESK  +VY  MNEPP  R RVGLT LT+AEYFRD   QD+LLFI+NIFRF Q  SEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

AT5G08690.1 ATP synthase alpha/beta family protein

3.7e-17

69.35

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        +ESK  +VY  MNEPP  R RVGLT LT+AEYFRD   QD+LLFI+NIFRF Q  SEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

ATCG00480.1 ATP synthase subunit beta

3.8e-22

82.26

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Query:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL
        AESKV +VY  MNEPP  RMRVGLT LTMAEYFRDV+EQD+LLFI+NIFRFVQ GSEVSALL
Subjt:  AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

Sequences

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CDS sequence

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GCAGAATCAAAAGTAATTATAGTTTATGCTCATATGAATGAACCGCCAATACCTCGTATGAGAGTTGGTTTAACTGTCCTAACTATGGCGGAATATTTCCGAGATGTTAG
TGAACAAGACATGCTTCTATTTATCAACAATATTTTTCGTTTTGTTCAAGTGGGATCTGAAGTATCTGCGTTACTT

mRNA sequence

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GCAGAATCAAAAGTAATTATAGTTTATGCTCATATGAATGAACCGCCAATACCTCGTATGAGAGTTGGTTTAACTGTCCTAACTATGGCGGAATATTTCCGAGATGTTAG
TGAACAAGACATGCTTCTATTTATCAACAATATTTTTCGTTTTGTTCAAGTGGGATCTGAAGTATCTGCGTTACTT

Protein sequence

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AESKVIIVYAHMNEPPIPRMRVGLTVLTMAEYFRDVSEQDMLLFINNIFRFVQVGSEVSALL

MS016113 (gene) of Bitter gourd (TR) v1 genome