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MS016115 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016115
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsm-like protein LSM7
Genome locationscaffold9_2:460010..464109
RNA-Seq ExpressionMS016115
SyntenyMS016115
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0000956 - nuclear-transcribed mRNA catabolic process (biological process)
GO:0005688 - U6 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0120115 - Lsm2-8 complex (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR017132 - Sm-like protein Lsm7
IPR044641 - Sm-like protein Lsm7/SmG


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5180511.1 U6 snrna-associated sm-like protein lsm7 [Thalictrum thalictroides]5.1e-4796.97Show/hide
Query:  QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLK TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Subjt:  QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

OMO69793.1 hypothetical protein CCACVL1_19268 [Corchorus capsularis]1.3e-4797.98Show/hide
Query:  QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Subjt:  QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

XP_010257259.1 PREDICTED: sm-like protein LSM7 [Nelumbo nucifera]5.1e-4797.96Show/hide
Query:  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF+QPDGA
Subjt:  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

XP_022152570.1 sm-like protein LSM7 [Momordica charantia]1.3e-47100Show/hide
Query:  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

XP_038984132.1 sm-like protein LSM7 [Phoenix dactylifera]5.1e-4796.97Show/hide
Query:  QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF+QP+GA
Subjt:  QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

TrEMBL top hitse value%identityAlignment
A0A1R3HHK1 Sm domain-containing protein6.5e-4897.98Show/hide
Query:  QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Subjt:  QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

A0A1R3IE97 Sm domain-containing protein6.5e-4897.98Show/hide
Query:  QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Subjt:  QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

A0A6J1A2J0 sm-like protein LSM72.5e-4797.96Show/hide
Query:  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Subjt:  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

A0A6J1DI46 sm-like protein LSM76.5e-48100Show/hide
Query:  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

A0A7J6V7E8 U6 snrna-associated sm-like protein lsm72.5e-4796.97Show/hide
Query:  QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLK TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Subjt:  QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

SwissProt top hitse value%identityAlignment
O74499 U6 snRNA-associated Sm-like protein LSm77.4e-2554.26Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD
        RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+P+D  K T   R+LGL+V RGT ++L++P+DG++EI NPF+Q +
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD

Q54HF6 Probable U6 snRNA-associated Sm-like protein LSm76.7e-2657.78Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPF
        +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RD +DPL TTD+ R LGL+VCRG++VM+V P +G + I NP+
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPF

Q9CQQ8 U6 snRNA-associated Sm-like protein LSm72.5e-2857.61Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQ
        +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RDPDD  K T+ TR+LGL+VCRGT+V+L+ P DG + I NPF+Q
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQ

Q9SI54 Sm-like protein LSM71.1e-4493.55Show/hide
Query:  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI
        SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTTDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Subjt:  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI

Q9UK45 U6 snRNA-associated Sm-like protein LSm76.5e-2958.33Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  IE++RDPDD  K T+ TR+LGL+VCRGT+V+L+ P DG + I NPFIQ   A
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

Arabidopsis top hitse value%identityAlignment
AT2G03870.1 Small nuclear ribonucleoprotein family protein7.8e-4693.55Show/hide
Query:  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI
        SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTTDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Subjt:  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI

AT2G03870.2 Small nuclear ribonucleoprotein family protein7.8e-4693.55Show/hide
Query:  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI
        SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTTDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Subjt:  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI

AT2G23930.1 probable small nuclear ribonucleoprotein G6.9e-1038.67Show/hide
Query:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVD
        DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  +E        +   D+T  +G++V RG +++ V  ++
Subjt:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVD

AT2G23930.2 probable small nuclear ribonucleoprotein G8.4e-0837.14Show/hide
Query:  VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVD
        +DK +Q+KL   R VTGTL+G+DQ +NLV+D  +E        +   D+T  +G++V RG +++ V  ++
Subjt:  VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVD

AT3G11500.1 Small nuclear ribonucleoprotein family protein1.5e-0936Show/hide
Query:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVD
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  +E            D    +G++V RG +++ V  ++
Subjt:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGTCTGGGAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTGGACAAAGGCGTCCAAGTGAAGCTTACCGGTGGCAGACAAGTTACGGGGACGCTGAAAGGATATGA
TCAATTGCTAAATCTTGTGCTGGATGAAGCTATAGAGTTTTTAAGAGATCCTGACGATCCATTGAAGACAACAGACCAAACTAGACGTCTTGGCCTAATTGTTTGCAGGG
GAACTGCTGTAATGCTTGTGTCTCCAGTTGATGGTACAGACGAGATCGCTAACCCCTTTATCCAACCGGACGGTGCA
mRNA sequenceShow/hide mRNA sequence
CAGTCTGGGAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTGGACAAAGGCGTCCAAGTGAAGCTTACCGGTGGCAGACAAGTTACGGGGACGCTGAAAGGATATGA
TCAATTGCTAAATCTTGTGCTGGATGAAGCTATAGAGTTTTTAAGAGATCCTGACGATCCATTGAAGACAACAGACCAAACTAGACGTCTTGGCCTAATTGTTTGCAGGG
GAACTGCTGTAATGCTTGTGTCTCCAGTTGATGGTACAGACGAGATCGCTAACCCCTTTATCCAACCGGACGGTGCA
Protein sequenceShow/hide protein sequence
QSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA