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MS016126 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016126
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSister chromatid cohesion 1 protein 3
Genome locationscaffold9_2:535813..535920
RNA-Seq ExpressionMS016126
SyntenyMS016126
Gene Ontology termsGO:0007064 - mitotic sister chromatid cohesion (biological process)
GO:0007130 - synaptonemal complex assembly (biological process)
GO:1990414 - replication-born double-strand break repair via sister chromatid exchange (biological process)
GO:0000795 - synaptonemal complex (cellular component)
GO:0034990 - nuclear mitotic cohesin complex (cellular component)
GO:0034991 - nuclear meiotic cohesin complex (cellular component)
GO:0003682 - chromatin binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR006910 - Rad21/Rec8-like protein, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053180.1 sister chromatid cohesion 1 protein 3 [Cucumis melo var. makuwa]3.0e-0577.78Show/hide
Query:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
        FGEV L L+TSSYLL GVVRIYS+QIDYLK D+DV+
Subjt:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
KAG6581597.1 putative helicase MAGATAMA 3, partial [Cucurbita argyrosperma subsp. sororia]3.0e-0577.78Show/hide
Query:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
        FGEV L L+TSSYLL GVVRIYS+QIDYLK D+DV+
Subjt:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
XP_011653424.1 sister chromatid cohesion 1 protein 3 [Cucumis sativus]3.0e-0577.78Show/hide
Query:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
        FGEV L L+TSSYLL GVVRIYS+QIDYLK D+DV+
Subjt:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
XP_022158405.1 sister chromatid cohesion 1 protein 3-like isoform X2 [Momordica charantia]3.0e-0577.78Show/hide
Query:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
        FGEV L L+TSSYLL GVVRIYS+QIDYLK D+DV+
Subjt:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
XP_038881442.1 sister chromatid cohesion 1 protein 3 isoform X3 [Benincasa hispida]3.0e-0577.78Show/hide
Query:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
        FGEV L L+TSSYLL GVVRIYS+QIDYLK D+DV+
Subjt:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
TrEMBL top hitse value%identityAlignment
A0A1S3CDP3 sister chromatid cohesion 1 protein 31.4e-0577.78Show/hide
Query:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
        FGEV L L+TSSYLL GVVRIYS+QIDYLK D+DV+
Subjt:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
A0A5A7UD91 Sister chromatid cohesion 1 protein 31.4e-0577.78Show/hide
Query:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
        FGEV L L+TSSYLL GVVRIYS+QIDYLK D+DV+
Subjt:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
A0A5D3BMF0 Sister chromatid cohesion 1 protein 31.4e-0577.78Show/hide
Query:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
        FGEV L L+TSSYLL GVVRIYS+QIDYLK D+DV+
Subjt:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
A0A6J1F6W9 sister chromatid cohesion 1 protein 31.4e-0577.78Show/hide
Query:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
        FGEV L L+TSSYLL GVVRIYS+QIDYLK D+DV+
Subjt:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
A0A6J1J0M2 sister chromatid cohesion 1 protein 31.4e-0577.78Show/hide
Query:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
        FGEV L L+TSSYLL GVVRIYS+QIDYLK D+DV+
Subjt:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
SwissProt top hitse value%identityAlignment
Q9FQ19 Sister chromatid cohesion 1 protein 37.6e-0458.33Show/hide
Query:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
        F EV L L+TSS+LL GVVRIYS+++DYL  D +++
Subjt:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
Arabidopsis top hitse value%identityAlignment
AT3G59550.1 Rad21/Rec8-like family protein5.4e-0558.33Show/hide
Query:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM
        F EV L L+TSS+LL GVVRIYS+++DYL  D +++
Subjt:  FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTGGAGAGGTTCTACTTCCACTCCAAACATCAAGCTACCTTCTGCGAGGTGTTGTACGGATTTATTCAGAGCAAATTGATTATTTAAAACAGGATCTTGATGTTATG
mRNA sequenceShow/hide mRNA sequence
TTTGGAGAGGTTCTACTTCCACTCCAAACATCAAGCTACCTTCTGCGAGGTGTTGTACGGATTTATTCAGAGCAAATTGATTATTTAAAACAGGATCTTGATGTTATG
Protein sequenceShow/hide protein sequence
FGEVLLPLQTSSYLLRGVVRIYSEQIDYLKQDLDVM