; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016131 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016131
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionmyb family transcription factor PHL5-like
Genome locationscaffold9_2:578453..579235
RNA-Seq ExpressionMS016131
SyntenyMS016131
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044848 - PHR1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048301.1 protein PHR1-LIKE 1-like [Cucumis melo var. makuwa]1.2e-3756.89Show/hide
Query:  EMLMSDFNGFYPLA---PPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHV-SSSFDSPQHQGTRGQSSNCQEFNGEH-SWPWDELTENENRKP
        +++M+++N F PL+    PF D Y FEG   FSE     DSSFA S+I D QHH H+ SSSF SP  Q  + QSS  QEF+GEH SW  +EL  N N+K 
Subjt:  EMLMSDFNGFYPLA---PPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHV-SSSFDSPQHQGTRGQSSNCQEFNGEH-SWPWDELTENENRKP

Query:  KSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        KS +VSKTR+KWTE+LHQKF++CV++LGGAQ          +ATPKQL HLMKTKGLT++HIKSHLQ
Subjt:  KSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ

TYK10646.1 protein PHR1-LIKE 1-like [Cucumis melo var. makuwa]1.2e-3756.89Show/hide
Query:  EMLMSDFNGFYPLA---PPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHV-SSSFDSPQHQGTRGQSSNCQEFNGEH-SWPWDELTENENRKP
        +++M+++N F PL+    PF D Y FEG   FSE     DSSFA S+I D QHH H+ SSSF SP  Q  + QSS  QEF+GEH SW  +EL  N N+K 
Subjt:  EMLMSDFNGFYPLA---PPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHV-SSSFDSPQHQGTRGQSSNCQEFNGEH-SWPWDELTENENRKP

Query:  KSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        KS +VSKTR+KWTE+LHQKF++CV++LGGAQ          +ATPKQL HLMKTKGLT++HIKSHLQ
Subjt:  KSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ

XP_022152692.1 myb family transcription factor PHL5-like [Momordica charantia]8.3e-7691.3Show/hide
Query:  MLMSDFNGFYPLAPPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHVSSSFDSPQHQGTRGQSSNCQEFNGEHSWPWDELTENENRKPKSIVVS
        MLMSDFNGFYPLA PFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHVSSSFDSPQHQGTRGQSSNCQEFNGEHSWPW+ELTENENRKPKSIVVS
Subjt:  MLMSDFNGFYPLAPPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHVSSSFDSPQHQGTRGQSSNCQEFNGEHSWPWDELTENENRKPKSIVVS

Query:  KTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        KTRVKWTEELHQKFVDCVNRLGGAQ          +ATPKQLCHLMKTKGL ILHIKSHLQ
Subjt:  KTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ

XP_022934744.1 myb family transcription factor PHL5-like isoform X1 [Cucurbita moschata]2.3e-3857.49Show/hide
Query:  EMLMSDFNGFYPLA---PPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHVSS-SFDSPQHQG-TRGQSSNCQEFNGEHSWPWDELTENENRKP
        ++LMSD NG   L+    P LD Y FEG + FSEAE    SSF SS+ +DDQ HLH SS +FDS +HQG  + QSS C EF+G+ SW W+EL  NEN+K 
Subjt:  EMLMSDFNGFYPLA---PPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHVSS-SFDSPQHQG-TRGQSSNCQEFNGEHSWPWDELTENENRKP

Query:  KSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        KS + SK R+KWTEELHQKF++CV++LGG Q          +ATPKQL HLMKT+GLT++HIKSHLQ
Subjt:  KSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ

XP_022982577.1 myb family transcription factor PHL5-like isoform X1 [Cucurbita maxima]6.4e-3657.06Show/hide
Query:  LAPPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHVSS-SFDSPQHQG-TRGQSSNCQEFNGEHSWPWDELTENENRKPKSIVVSKTRVKWTEE
        L  P LD Y FEG + FSEAE    SSF SS+ +DDQHHL  SS +FDS +HQG  + QSS CQE NG+ SW W+EL  NEN+K KS +  K R+KWTEE
Subjt:  LAPPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHVSS-SFDSPQHQG-TRGQSSNCQEFNGEHSWPWDELTENENRKPKSIVVSKTRVKWTEE

Query:  LHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQVILKTCNIFLH
        LHQKF++CV++LGG Q          +ATPKQL HLMKT+GLT++HIKSHLQ     C I  H
Subjt:  LHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQVILKTCNIFLH

TrEMBL top hitse value%identityAlignment
A0A0A0LEY1 Uncharacterized protein7.9e-4050.92Show/hide
Query:  EMLMSDFNGFYPLA---PPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHVSSSFDSPQHQGTRGQSSNCQEFNGEH-SWPWDELTE-NENRKP
        +++M+++  F PL+    PF D Y FEG   FSE E    SSFASS+  D  HH  +SSSF SP  Q  + QS+  QEF+GE+ SW  +EL   N N+K 
Subjt:  EMLMSDFNGFYPLA---PPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHVSSSFDSPQHQGTRGQSSNCQEFNGEH-SWPWDELTE-NENRKP

Query:  KSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQV----ILKTCNIFL---HCLIDVFNQMI-SISE
        KS +VSKTR+KWTEELHQ+F +CV++LGGAQ    +   SAEATPKQL HLMKTKGLT++HIKSHLQV     +K  NI L   H    VF+Q++ S+SE
Subjt:  KSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQV----ILKTCNIFL---HCLIDVFNQMI-SISE

Query:  VPYFSAHSRIFRRYLHVY
        + +F A SR F+R + ++
Subjt:  VPYFSAHSRIFRRYLHVY

A0A5A7U415 Protein PHR1-LIKE 1-like5.6e-3856.89Show/hide
Query:  EMLMSDFNGFYPLA---PPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHV-SSSFDSPQHQGTRGQSSNCQEFNGEH-SWPWDELTENENRKP
        +++M+++N F PL+    PF D Y FEG   FSE     DSSFA S+I D QHH H+ SSSF SP  Q  + QSS  QEF+GEH SW  +EL  N N+K 
Subjt:  EMLMSDFNGFYPLA---PPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHV-SSSFDSPQHQGTRGQSSNCQEFNGEH-SWPWDELTENENRKP

Query:  KSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        KS +VSKTR+KWTE+LHQKF++CV++LGGAQ          +ATPKQL HLMKTKGLT++HIKSHLQ
Subjt:  KSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ

A0A5D3CJQ9 Protein PHR1-LIKE 1-like5.6e-3856.89Show/hide
Query:  EMLMSDFNGFYPLA---PPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHV-SSSFDSPQHQGTRGQSSNCQEFNGEH-SWPWDELTENENRKP
        +++M+++N F PL+    PF D Y FEG   FSE     DSSFA S+I D QHH H+ SSSF SP  Q  + QSS  QEF+GEH SW  +EL  N N+K 
Subjt:  EMLMSDFNGFYPLA---PPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHV-SSSFDSPQHQGTRGQSSNCQEFNGEH-SWPWDELTENENRKP

Query:  KSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        KS +VSKTR+KWTE+LHQKF++CV++LGGAQ          +ATPKQL HLMKTKGLT++HIKSHLQ
Subjt:  KSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ

A0A6J1DGZ3 myb family transcription factor PHL5-like4.0e-7691.3Show/hide
Query:  MLMSDFNGFYPLAPPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHVSSSFDSPQHQGTRGQSSNCQEFNGEHSWPWDELTENENRKPKSIVVS
        MLMSDFNGFYPLA PFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHVSSSFDSPQHQGTRGQSSNCQEFNGEHSWPW+ELTENENRKPKSIVVS
Subjt:  MLMSDFNGFYPLAPPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHVSSSFDSPQHQGTRGQSSNCQEFNGEHSWPWDELTENENRKPKSIVVS

Query:  KTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        KTRVKWTEELHQKFVDCVNRLGGAQ          +ATPKQLCHLMKTKGL ILHIKSHLQ
Subjt:  KTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ

A0A6J1F3G0 myb family transcription factor PHL5-like isoform X11.1e-3857.49Show/hide
Query:  EMLMSDFNGFYPLA---PPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHVSS-SFDSPQHQG-TRGQSSNCQEFNGEHSWPWDELTENENRKP
        ++LMSD NG   L+    P LD Y FEG + FSEAE    SSF SS+ +DDQ HLH SS +FDS +HQG  + QSS C EF+G+ SW W+EL  NEN+K 
Subjt:  EMLMSDFNGFYPLA---PPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHVSS-SFDSPQHQG-TRGQSSNCQEFNGEHSWPWDELTENENRKP

Query:  KSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        KS + SK R+KWTEELHQKF++CV++LGG Q          +ATPKQL HLMKT+GLT++HIKSHLQ
Subjt:  KSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ

SwissProt top hitse value%identityAlignment
B8B5N8 Protein PHOSPHATE STARVATION RESPONSE 23.7e-1054.84Show/hide
Query:  SKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        SKTR++WT ELH++FVD VN LGG          S +ATPK +  LMK   LTI H+KSHLQ
Subjt:  SKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ

F4J3P7 Myb family transcription factor PHL138.2e-1043.84Show/hide
Query:  NENRKPKSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        N    P S + SK R++WT ELH+ FV+ +N+LGG          S  ATPK +  L+ + GLT+ H+KSHLQ
Subjt:  NENRKPKSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ

Q0WVU3 Myb family transcription factor PHL53.9e-1253.97Show/hide
Query:  VSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        V+KTR++WT++LH+KFV+CVNRLGGA           +ATPK +   M + GLTI H+KSHLQ
Subjt:  VSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ

Q6Z156 Protein PHOSPHATE STARVATION RESPONSE 23.7e-1054.84Show/hide
Query:  SKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        SKTR++WT ELH++FVD VN LGG          S +ATPK +  LMK   LTI H+KSHLQ
Subjt:  SKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ

Q8GXC2 Myb family transcription factor PHL48.2e-1040Show/hide
Query:  QHQGTRGQSSNCQEFNGEHSWPWDEL----TENENRKPKSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHI
        Q Q    Q S+C E       P D      + N +    +   +K R++WT ELH+ FVD VN+LGG          S EATPK +   MK +GLTI H+
Subjt:  QHQGTRGQSSNCQEFNGEHSWPWDEL----TENENRKPKSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHI

Query:  KSHLQ
        KSHLQ
Subjt:  KSHLQ

Arabidopsis top hitse value%identityAlignment
AT2G20400.1 myb-like HTH transcriptional regulator family protein5.8e-1140Show/hide
Query:  QHQGTRGQSSNCQEFNGEHSWPWDEL----TENENRKPKSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHI
        Q Q    Q S+C E       P D      + N +    +   +K R++WT ELH+ FVD VN+LGG          S EATPK +   MK +GLTI H+
Subjt:  QHQGTRGQSSNCQEFNGEHSWPWDEL----TENENRKPKSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHI

Query:  KSHLQ
        KSHLQ
Subjt:  KSHLQ

AT3G04450.1 Homeodomain-like superfamily protein5.8e-1143.84Show/hide
Query:  NENRKPKSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        N    P S + SK R++WT ELH+ FV+ +N+LGG          S  ATPK +  L+ + GLT+ H+KSHLQ
Subjt:  NENRKPKSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ

AT3G04450.2 Homeodomain-like superfamily protein5.8e-1143.84Show/hide
Query:  NENRKPKSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        N    P S + SK R++WT ELH+ FV+ +N+LGG          S  ATPK +  L+ + GLT+ H+KSHLQ
Subjt:  NENRKPKSIVVSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ

AT5G06800.1 myb-like HTH transcriptional regulator family protein2.8e-1353.97Show/hide
Query:  VSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        V+KTR++WT++LH+KFV+CVNRLGGA           +ATPK +   M + GLTI H+KSHLQ
Subjt:  VSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ

AT5G06800.2 myb-like HTH transcriptional regulator family protein2.8e-1353.97Show/hide
Query:  VSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ
        V+KTR++WT++LH+KFV+CVNRLGGA           +ATPK +   M + GLTI H+KSHLQ
Subjt:  VSKTRVKWTEELHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAAATGTTGATGAGTGATTTCAATGGGTTTTATCCACTCGCGCCGCCGTTTCTTGATCTCTATGCCTTTGAGGGCTACGATGCGTTTTCAGAAGCCGAGTCTCACTTTGA
TTCTTCGTTTGCATCCTCCAGCATTCAAGATGATCAACATCACCTACATGTCTCGTCTTCTTTTGACTCACCACAACATCAAGGAACTCGAGGTCAGTCGAGCAATTGCC
AAGAATTCAATGGTGAGCACTCCTGGCCATGGGACGAGTTGACTGAAAACGAGAATAGAAAGCCAAAATCAATAGTCGTTTCAAAGACGCGAGTTAAATGGACCGAGGAA
CTTCACCAGAAATTCGTCGACTGCGTCAATCGACTCGGAGGTGCTCAAAGTAATAACTATGTTTGTTGCAAATCAGCAGAAGCCACACCAAAGCAACTCTGTCACTTGAT
GAAAACTAAAGGCTTGACTATCTTGCATATAAAAAGCCACTTGCAGGTTATATTAAAAACTTGTAACATTTTTCTTCACTGTTTGATTGATGTTTTTAACCAAATGATTT
CCATTTCAGAAGTACCGTATTTCTCAGCACACTCAAGAATTTTCAGAAGGTACCTTCATGTTTAC
mRNA sequenceShow/hide mRNA sequence
GAAATGTTGATGAGTGATTTCAATGGGTTTTATCCACTCGCGCCGCCGTTTCTTGATCTCTATGCCTTTGAGGGCTACGATGCGTTTTCAGAAGCCGAGTCTCACTTTGA
TTCTTCGTTTGCATCCTCCAGCATTCAAGATGATCAACATCACCTACATGTCTCGTCTTCTTTTGACTCACCACAACATCAAGGAACTCGAGGTCAGTCGAGCAATTGCC
AAGAATTCAATGGTGAGCACTCCTGGCCATGGGACGAGTTGACTGAAAACGAGAATAGAAAGCCAAAATCAATAGTCGTTTCAAAGACGCGAGTTAAATGGACCGAGGAA
CTTCACCAGAAATTCGTCGACTGCGTCAATCGACTCGGAGGTGCTCAAAGTAATAACTATGTTTGTTGCAAATCAGCAGAAGCCACACCAAAGCAACTCTGTCACTTGAT
GAAAACTAAAGGCTTGACTATCTTGCATATAAAAAGCCACTTGCAGGTTATATTAAAAACTTGTAACATTTTTCTTCACTGTTTGATTGATGTTTTTAACCAAATGATTT
CCATTTCAGAAGTACCGTATTTCTCAGCACACTCAAGAATTTTCAGAAGGTACCTTCATGTTTAC
Protein sequenceShow/hide protein sequence
EMLMSDFNGFYPLAPPFLDLYAFEGYDAFSEAESHFDSSFASSSIQDDQHHLHVSSSFDSPQHQGTRGQSSNCQEFNGEHSWPWDELTENENRKPKSIVVSKTRVKWTEE
LHQKFVDCVNRLGGAQSNNYVCCKSAEATPKQLCHLMKTKGLTILHIKSHLQVILKTCNIFLHCLIDVFNQMISISEVPYFSAHSRIFRRYLHVY