; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016136 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016136
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHomeobox-leucine zipper protein family
Genome locationscaffold9_2:598326..599564
RNA-Seq ExpressionMS016136
SyntenyMS016136
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR001356 - Homeobox domain
IPR003106 - Leucine zipper, homeobox-associated
IPR009057 - Homeobox-like domain superfamily
IPR017970 - Homeobox, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606860.1 Homeobox-leucine zipper protein HOX11, partial [Cucurbita argyrosperma subsp. sororia]1.5e-4677.95Show/hide
Query:  EEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALK
        +E++Q +G RKKLRLSREQSAFLE+SFK+HH+LYPKQKVELA+RLNLRPRQVEVWFQNRRARTKLKQTEV+CEYLK  C+TL+Q N KL KEL DL+ALK
Subjt:  EEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALK

Query:  TTDSLFFHLPPTTLTICTSCQRAAGKH
        TTDSLF H P TTLT+C SC+RAA  H
Subjt:  TTDSLFFHLPPTTLTICTSCQRAAGKH

KAG7036566.1 Homeobox-leucine zipper protein HOX11, partial [Cucurbita argyrosperma subsp. argyrosperma]8.8e-4778.74Show/hide
Query:  EEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALK
        +E++Q LG RKKLRLSREQSAFLE+SFK+HH+LYPKQKVELA+RLNLRPRQVEVWFQNRRARTKLKQTEV+CEYLK  C+TL+Q N KL KEL DL+ALK
Subjt:  EEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALK

Query:  TTDSLFFHLPPTTLTICTSCQRAAGKH
        TTDSLF H P TTLT+C SC+RAA  H
Subjt:  TTDSLFFHLPPTTLTICTSCQRAAGKH

XP_022152694.1 homeobox-leucine zipper protein HOX27-like isoform X1 [Momordica charantia]7.2e-6599.24Show/hide
Query:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA
        DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTE ECEYLKKWCETLSQHNTKLLKELTDLKA
Subjt:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA

Query:  LKTTDSLFFHLPPTTLTICTSCQRAAGKHLAD
        LKTTDSLFFHLPPTTLTICTSCQRAAGKHLAD
Subjt:  LKTTDSLFFHLPPTTLTICTSCQRAAGKHLAD

XP_023525421.1 homeobox-leucine zipper protein HOX11-like [Cucurbita pepo subsp. pepo]4.0e-4779.53Show/hide
Query:  EEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALK
        +E++Q LG RKKLRLSREQSAFLEESFK+HH+LYPKQKVELA+RLNLRPRQVEVWFQNRRARTKLKQTEV+CEYLK  C+TL+Q N KL KEL DL+ALK
Subjt:  EEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALK

Query:  TTDSLFFHLPPTTLTICTSCQRAAGKH
        TTDSLF H P TTLT+C SC+RAA  H
Subjt:  TTDSLFFHLPPTTLTICTSCQRAAGKH

XP_038905671.1 homeobox-leucine zipper protein HOX11-like [Benincasa hispida]1.2e-4881.75Show/hide
Query:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA
        DEEEEE NLG RKKLRL+R+QSAFLEESFK+HH+LYPKQK+E+A+RLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKK+C TL+Q NTKL KEL DL+A
Subjt:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA

Query:  LKTTDSLFFHLPPTTLTICTSCQRAA
        LKTT SLF H P TTLT+C SC+RAA
Subjt:  LKTTDSLFFHLPPTTLTICTSCQRAA

TrEMBL top hitse value%identityAlignment
A0A0A0LEY4 Homeobox domain-containing protein4.0e-4576.74Show/hide
Query:  DEEEEEQNLGL----RKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELT
        +EE+EE ++ +    RKKLRLSR+QSAFLEESFKEHH+LYPKQK+E+A+RLNLRPRQVEVWFQNRRARTKLKQ EVECEYLKK C TL+Q NTKL KEL 
Subjt:  DEEEEEQNLGL----RKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELT

Query:  DLKALKTTDSLFFHLPPTTLTICTSCQRA
        DLKALKTT SLF + PPTTLT+C SC+RA
Subjt:  DLKALKTTDSLFFHLPPTTLTICTSCQRA

A0A1S3CFB9 homeobox-leucine zipper protein HOX11-like3.4e-4475.97Show/hide
Query:  DEEEEEQNL----GLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELT
        +EE+EE ++    G RKKLRLSR QSAFLEESFK+HH+LYPKQK+E+A+RLNLRPRQVEVWFQNRRARTKLKQ EVECEYLKK C TL+Q NTKL KEL 
Subjt:  DEEEEEQNL----GLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELT

Query:  DLKALKTTDSLFFHLPPTTLTICTSCQRA
        DL+ALKTT SLF + PPTTLT+C SC+RA
Subjt:  DLKALKTTDSLFFHLPPTTLTICTSCQRA

A0A6J1DGT2 homeobox-leucine zipper protein HOX27-like isoform X13.5e-6599.24Show/hide
Query:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA
        DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTE ECEYLKKWCETLSQHNTKLLKELTDLKA
Subjt:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA

Query:  LKTTDSLFFHLPPTTLTICTSCQRAAGKHLAD
        LKTTDSLFFHLPPTTLTICTSCQRAAGKHLAD
Subjt:  LKTTDSLFFHLPPTTLTICTSCQRAAGKHLAD

A0A6J1GBE1 homeobox-leucine zipper protein HOX11-like1.1e-4578.12Show/hide
Query:  EEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYP-KQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKAL
        +E++Q LG RKKLRLSREQSAFLE+SFK+HH+LYP KQKVELA+RLNLRPRQVEVWFQNRRARTKLKQTEV+CEYLK  C+TL+Q N KL KEL DL+AL
Subjt:  EEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYP-KQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKAL

Query:  KTTDSLFFHLPPTTLTICTSCQRAAGKH
        KTTDSLF H P TTLT+C SC+RAA  H
Subjt:  KTTDSLFFHLPPTTLTICTSCQRAAGKH

A0A6J1KEH0 homeobox-leucine zipper protein HOX11-like7.1e-4275.2Show/hide
Query:  EEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYP-KQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKAL
        +E++Q LG RKKLRL REQSAFLE+ FK+HH+L P KQK E+A+RLNLRPRQVEVWFQNRRARTKLKQTEV+CEYLK  C+TL+Q N KL KEL DL+AL
Subjt:  EEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYP-KQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKAL

Query:  KTTDSLFFHLPPTTLTICTSCQRAA
        KTTDSLF H P TTLT+C SC+RAA
Subjt:  KTTDSLFFHLPPTTLTICTSCQRAA

SwissProt top hitse value%identityAlignment
A2YW03 Homeobox-leucine zipper protein HOX273.4e-4169.11Show/hide
Query:  EEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALKT
        ++++    RKKLRLS+EQSAFLEESFKEH +L PKQKV LAK+LNLRPRQVEVWFQNRRARTKLKQTEV+CEYLK+ CETL++ N +L KEL +L+ALKT
Subjt:  EEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALKT

Query:  TDSLFFHLPPTTLTICTSCQRAA
            + HLP TTL++C SC+R A
Subjt:  TDSLFFHLPPTTLTICTSCQRAA

A2Z1U1 Homeobox-leucine zipper protein HOX117.5e-4169.11Show/hide
Query:  EEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALKT
        +E+     RKKLRLS+EQSAFLEESFKEH +L PKQK+ LAK+LNLRPRQVEVWFQNRRARTKLKQTEV+CEYLK+ CETL++ N +L KEL +L+ALKT
Subjt:  EEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALKT

Query:  TDSLFFHLPPTTLTICTSCQRAA
            + HLP TTL++C SC+R A
Subjt:  TDSLFFHLPPTTLTICTSCQRAA

P46665 Homeobox-leucine zipper protein HAT141.9e-3964.29Show/hide
Query:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA
        +E+ +++N   RKKLRLS++QSAFLE+SFKEH +L PKQK+ LAK+LNLRPRQVEVWFQNRRARTKLKQTEV+CEYLK+ CE+L++ N +L KE+ +L+ 
Subjt:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA

Query:  LKTTDSLFFHLPPTTLTICTSCQRAA
        LKT+   +  LP TTLT+C SC+R A
Subjt:  LKTTDSLFFHLPPTTLTICTSCQRAA

Q67UE2 Homeobox-leucine zipper protein HOX117.5e-4169.11Show/hide
Query:  EEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALKT
        +E+     RKKLRLS+EQSAFLEESFKEH +L PKQK+ LAK+LNLRPRQVEVWFQNRRARTKLKQTEV+CEYLK+ CETL++ N +L KEL +L+ALKT
Subjt:  EEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALKT

Query:  TDSLFFHLPPTTLTICTSCQRAA
            + HLP TTL++C SC+R A
Subjt:  TDSLFFHLPPTTLTICTSCQRAA

Q6YPD0 Homeobox-leucine zipper protein HOX273.4e-4169.11Show/hide
Query:  EEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALKT
        ++++    RKKLRLS+EQSAFLEESFKEH +L PKQKV LAK+LNLRPRQVEVWFQNRRARTKLKQTEV+CEYLK+ CETL++ N +L KEL +L+ALKT
Subjt:  EEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALKT

Query:  TDSLFFHLPPTTLTICTSCQRAA
            + HLP TTL++C SC+R A
Subjt:  TDSLFFHLPPTTLTICTSCQRAA

Arabidopsis top hitse value%identityAlignment
AT2G22800.1 Homeobox-leucine zipper protein family1.9e-3962.99Show/hide
Query:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA
        D  E+E+ +  RKKLRL+++QSA LEESFK+H +L PKQK  LA++LNLRPRQVEVWFQNRRARTKLKQTEV+CE+LKK CETL+  N +L KE+ +LK 
Subjt:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA

Query:  LKTTDSLFFHLPPTTLTICTSCQRAAG
        LK T   + H+P +TLT C SC+R  G
Subjt:  LKTTDSLFFHLPPTTLTICTSCQRAAG

AT2G44910.1 homeobox-leucine zipper protein 44.0e-3761.42Show/hide
Query:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA
        D+E+     G RKKLRLS++Q+  LEE+FKEH +L PKQK+ LAK+LNLR RQVEVWFQNRRARTKLKQTEV+CEYLK+ C+ L++ N +L KE+++L+A
Subjt:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA

Query:  LKTTDSLFFHL-PPTTLTICTSCQRAA
        LK +  L+ H+ PPTTLT+C SC+R +
Subjt:  LKTTDSLFFHL-PPTTLTICTSCQRAA

AT3G60390.1 homeobox-leucine zipper protein 31.8e-3767.24Show/hide
Query:  RKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALKTTDSLFFHL
        RKKLRLS+EQ+  LEE+FKEH +L PKQK+ LAK+LNLR RQVEVWFQNRRARTKLKQTEV+CEYLK+ CE L+  N +L KE+++L+ALK +  L+ H+
Subjt:  RKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALKTTDSLFFHL

Query:  -PPTTLTICTSCQRAA
         PPTTLT+C SC+R A
Subjt:  -PPTTLTICTSCQRAA

AT4G37790.1 Homeobox-leucine zipper protein family2.5e-3962.2Show/hide
Query:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA
        D+ ++E+ +  RKKLRL+++QSA LE++FK H +L PKQK  LA++LNLRPRQVEVWFQNRRARTKLKQTEV+CE+LKK CETL+  N +L KEL DLKA
Subjt:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA

Query:  LKTTDSLFFHLPPTTLTICTSCQRAAG
        LK +   + H+P  TLT+C SC+R  G
Subjt:  LKTTDSLFFHLPPTTLTICTSCQRAAG

AT5G06710.1 homeobox from Arabidopsis thaliana1.3e-4064.29Show/hide
Query:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA
        +E+ +++N   RKKLRLS++QSAFLE+SFKEH +L PKQK+ LAK+LNLRPRQVEVWFQNRRARTKLKQTEV+CEYLK+ CE+L++ N +L KE+ +L+ 
Subjt:  DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKA

Query:  LKTTDSLFFHLPPTTLTICTSCQRAA
        LKT+   +  LP TTLT+C SC+R A
Subjt:  LKTTDSLFFHLPPTTLTICTSCQRAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATGAAGAGGAAGAGGAGCAGAATTTGGGGTTGAGGAAGAAACTGCGGCTGTCGAGAGAACAGTCGGCGTTTCTTGAAGAAAGCTTCAAAGAACACCACTCGCTTTACCC
TAAGCAAAAGGTAGAACTTGCAAAGAGACTGAACCTTCGTCCTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGGGCAAGAACTAAGCTGAAGCAAACGGAAGTGGAGT
GTGAATACTTGAAGAAATGGTGCGAAACGCTGAGCCAACACAACACAAAGCTTCTGAAGGAACTCACAGATTTGAAAGCCTTGAAAACCACTGATTCTCTCTTCTTCCAT
TTGCCCCCCACCACTCTCACCATCTGCACGTCTTGTCAACGCGCCGCCGGAAAACACCTCGCCGAC
mRNA sequenceShow/hide mRNA sequence
GATGAAGAGGAAGAGGAGCAGAATTTGGGGTTGAGGAAGAAACTGCGGCTGTCGAGAGAACAGTCGGCGTTTCTTGAAGAAAGCTTCAAAGAACACCACTCGCTTTACCC
TAAGCAAAAGGTAGAACTTGCAAAGAGACTGAACCTTCGTCCTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGGGCAAGAACTAAGCTGAAGCAAACGGAAGTGGAGT
GTGAATACTTGAAGAAATGGTGCGAAACGCTGAGCCAACACAACACAAAGCTTCTGAAGGAACTCACAGATTTGAAAGCCTTGAAAACCACTGATTCTCTCTTCTTCCAT
TTGCCCCCCACCACTCTCACCATCTGCACGTCTTGTCAACGCGCCGCCGGAAAACACCTCGCCGAC
Protein sequenceShow/hide protein sequence
DEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKKWCETLSQHNTKLLKELTDLKALKTTDSLFFH
LPPTTLTICTSCQRAAGKHLAD